SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07040.1 | AT | NB-ARC domain-containing disease resistance protein | JGI | N/A | IEA |
| GO:0006952 | GO-bp | defense response | EnsemblGenomes | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0043531 | GO-mf | ADP binding | EnsemblGenomes | N/A | IEA |
| GO:0043531 | GO-mf | ADP binding | JGI | N/A | IEA |
| KOG4658 | KOG | Apoptotic ATPase | JGI | N/A | IEA |
| PTHR11017 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR11017:SF126 | Panther | JGI | N/A | IEA | |
| PF00931 | PFAM | NB-ARC domain | JGI | N/A | IEA |
|
|
|
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g317700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g10490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g093400.1 sequence-type=CDS polypeptide=Glyma.18g093400.1.p locus=Glyma.18g093400 ID=Glyma.18g093400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGAAGTTGCAGGAAATTGCAGCATCCTTGGCTGTTGATTATTTGCTTCCACCCTTGAAGAAAGCTGTGAACTCAGTCATGGAGGTTCCAAAAGATGTTGCAGACATGAAAGACAAACTTGATAGGATTCAAGCCATCATTCATGATGTAGATAAGATGGCAGCAGCTGAAGAAGGCAACTCACATGATGGTCTCAAAGCAAAGCTGAAGCAGCTTGTGGAAACATCTTTTTGCATGGAAGATATCGCTGATGAATACATGATCCATGAGGAAAAGCAGCTTGGTGATGATCCTGGATGTGCAGCTTTACCTTGTAAGGCTATTGATTTCGTCAAAACTACGGCCTCTCGTCTTCAATTTGCATACATGAACGAGGACGTGAAATCCGAATTTCGTGGAATCAAGGAAAGGAATGAAAGTGAAGATAGCTCCCAAATCCAATCTTCTGGAGGAAACCAAAACATCCCGTTCGATAACCTTCGAATGGCTCCTCTGTATCTTAAGGAGGCTGAGGTTGTGGGCTTTGACGGCCCTAGAGATACATTGGAAAAATGGTTGAAAGAGGGGCGAAAAAAGCGCACTGTAATCTCTGTGGTAGGAATGGGAGGACTCGGAAAAACTACTCTTGCCAAGAAAGTTTTTGACAAAGTCCGAAATCATTTCACTCTCCATGCATGGATCACAGTGTCTCAATCCTACACCATAGAAGGACTGTTGAGGGATATGTTGCTCAACTTTGTAGAAGAAGAAAAAAGAGTGGATCATGCTTCAATGGATAAAAAATCATTGATAGATCAAGTGAGAAAGCACTTGCACCACAAGAGGTATGTTGTTGTGTTTGATGACGTGTGGAATACTCTTTTTTGGCAAGAAATGGAGTTTGCTTTAATTGATGATGAAAATGGAAGTAGGATATTAATGACAACCAGAAATCAGGATGTTGTTAATTCCTGTAAGAGATCTGCTGTTATTAAAGTGCATGAGCTGCAACCTTTAACTCTTGAAAAATCATTGGAATTGTTTTATACAAAGGCATTTGGATCTGACTTTGATGGACATTGTCCAAGCAATCTTAAGGACATATCCACAGAAATTGTTAAAAAGTGTCAAGGTTTACCACTAGCAATTGTGGTCATTGGTGGTCTTTTATTCAACGAAAAAAGAGAAATTCTTAAATGGCAGAGGTTTTATCAGAATCTAAGTTCTGAACTAGGGAAAAATCTCAGTTTATCTCCCGTGAAAAAGATTTTGGATTTCAGTTATCATGATTTGCCTTACAATCTCAAACCATGCTTCTTGTATTTCGGAATATATCCAGAAGATTATAAAGTTGAACGCGGGAGATTGATTCCACAATTGATAGCTGAGGGGTTTGTCAAATCTGAAGCAACAAAAACTTTAGAGGAAGTGGCAGAAAAATATTTAAATGAGTTGATCCAAAGAAGTTTGGTTCAAGTATCTTCATTTACTAAGGGTGGCAAAATTAAAAGCTGTGGTGTTCATGACCTAGTACATGAAATTATCCGTGAGAAAAATCAAGATTTAAGCTTTTGTCATTCTGCAAGTGAGCGTGAGAACTTGCCAAGAAGTGGGATGATTCGTCGCCTAACAATAGCATCCGGTTCCAACAATTTGATGGGAAGTGTTGTAAACTCAAACATTCGATCACTTCATGTTTTTAGTGATGAAGAATTATCAGAATCCTCGGTTGAGAGAATGCCTACAAACTACAGGTTATTAAGGGTACTTCATTTTGAAGGCGATTCACTGCATAATTATGTTCGGCTCACAGAAAATTTTGGGGATTTATCCCTTTTGACGTACTTAAGCTTCAGAAATTCAAAGATAGTAAATCTTCCAAAATCAGTAGGCGTGTTGCACAACCTAGAAACATTGGATCTAAGAGAATCAGGGGTGCGTAGGATGCCAAGAGAGATCTACAAGCTTAAAAAGTTAAGACATCTCCTAGTTTATGATAAGTTGTTTGGTTTCTTGGGTGGGCTTCAAATGGAGGGTGGCATTGGAGATCTAACGTCGCTACAAACACTACGTGATATGGATGCAGACCATGTTACAGAAGAAGTAATGAAAGGGTTGGAAAGACTTACACAATTAAGGGTGTTGGGCTTGACCTGTGTTCGGGGACAATTCAAAAGTTCTCTGTGCTCCTTGATAAACAAGATGCAACGCCTGGACAAGTTATACATTACTGTATCAACATTTAGGTCCATTAATTTGCAATTTGATGTATGTGCACCTGTACTTCAGAAGGTTCGCATTGTAGGGGGGTTAAAGGAGTTCCCAAACTGGGTTGCCAAGCTCCAAAATCTTGTTACGTTGTCCTTGACACGCACCCGTTTGACTGATGATCCATTGCCACTACTTAAAGACCTACCATATTTGTCGTCCCTCTTTATTAATCATAGTGCATACAAGGGTGAGGTTTTGCAGTTCCCAAACAGGGGGTTTCAGAACCTAAAGCAAATACTACTGAGACGCTTGTATGGTTTGAAATCCATTGTTATTGAAGATGGAGCATTGCCTTCTCTCGAAAAGTTCAAGTTAGTTGATATTCACCCACTGAAGAAGTTGCCTTCGGGTCTCAACAAGTTACCAAAGCTTGAGGTTTTCCATGTTATTGATATGTCATATGAATTTGAAGAAAACTTTCATCTCAACAGAGGACAACGTCAATGGATAATAGAATGA
>Glyma.18g093400.1.p sequence-type=predicted peptide transcript=Glyma.18g093400.1 locus=Glyma.18g093400 ID=Glyma.18g093400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEKLQEIAASLAVDYLLPPLKKAVNSVMEVPKDVADMKDKLDRIQAIIHDVDKMAAAEEGNSHDGLKAKLKQLVETSFCMEDIADEYMIHEEKQLGDDPGCAALPCKAIDFVKTTASRLQFAYMNEDVKSEFRGIKERNESEDSSQIQSSGGNQNIPFDNLRMAPLYLKEAEVVGFDGPRDTLEKWLKEGRKKRTVISVVGMGGLGKTTLAKKVFDKVRNHFTLHAWITVSQSYTIEGLLRDMLLNFVEEEKRVDHASMDKKSLIDQVRKHLHHKRYVVVFDDVWNTLFWQEMEFALIDDENGSRILMTTRNQDVVNSCKRSAVIKVHELQPLTLEKSLELFYTKAFGSDFDGHCPSNLKDISTEIVKKCQGLPLAIVVIGGLLFNEKREILKWQRFYQNLSSELGKNLSLSPVKKILDFSYHDLPYNLKPCFLYFGIYPEDYKVERGRLIPQLIAEGFVKSEATKTLEEVAEKYLNELIQRSLVQVSSFTKGGKIKSCGVHDLVHEIIREKNQDLSFCHSASERENLPRSGMIRRLTIASGSNNLMGSVVNSNIRSLHVFSDEELSESSVERMPTNYRLLRVLHFEGDSLHNYVRLTENFGDLSLLTYLSFRNSKIVNLPKSVGVLHNLETLDLRESGVRRMPREIYKLKKLRHLLVYDKLFGFLGGLQMEGGIGDLTSLQTLRDMDADHVTEEVMKGLERLTQLRVLGLTCVRGQFKSSLCSLINKMQRLDKLYITVSTFRSINLQFDVCAPVLQKVRIVGGLKEFPNWVAKLQNLVTLSLTRTRLTDDPLPLLKDLPYLSSLFINHSAYKGEVLQFPNRGFQNLKQILLRRLYGLKSIVIEDGALPSLEKFKLVDIHPLKKLPSGLNKLPKLEVFHVIDMSYEFEENFHLNRGQRQWIIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
