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Report for Sequence Feature Glyma.18g091000

Feature Type:gene_model
Chromosome:Gm18
Start:9060662
stop:9066712
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g091000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24830.1AT zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2185 KOG Predicted RNA-processing protein, contains G-patch domain JGI N/AIEA
PTHR23329Panther TUFTELIN-INTERACTING PROTEIN 11-RELATED JGI N/AIEA
PTHR23329:SF2Panther ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN JGI N/AIEA
PF01585PFAM G-patch domain JGI N/AIEA

Expression Patterns of Glyma.18g091000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g091000
ParalogEvidenceComments
Glyma.08g321000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g091000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g10210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g091000
>Glyma.18g091000.2 sequence-type=transcript locus=Glyma.18g091000 ID=Glyma.18g091000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGTGTGTGTTGTAACGTGGTTGAATTTGGTGGTGGCAATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTGGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATTCCACAGATGTTGAACCAGAGCCATTAGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGACGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATGCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAGTTAGGAGTCAAGACTCAGTTATGTTTTTAGTTGCATGATATAATATGTCTTTATTTTATGCTGATGACCTTAAAATGAAGAGTAAAAAGAAAGGAGATTTCAAAATGTGTAGCTCAACTAAGATATTAGTACATTGCACTTTTGTATGCAACCTTGTACATGTTGTGCAATTATTCAATTGCATGATGTATGCACGTAGTTTTGTATCGAGTCCTTGTGTTTTGAATAGTTTTACTTGCCTTGTTTAAAAGGAAACAAGAACAAGTAAATTCAGTACCAAATAGACTCAATATGGGAGAGTATAACACACGGACTAAGTTTTATCAAGGAGCTTCCAATAATTTTAATATAGAATTTTGGCAAT

>Glyma.18g091000.3 sequence-type=transcript locus=Glyma.18g091000 ID=Glyma.18g091000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCAATGTATTGATTTTTCAGATCACAGAAATTAGctctcgatctctctctctattcttcttactcccactctcAAGTTTCTACACAAATTGTGTTCTACCTGGGATCAGGGCCACAGAAACTGGTGCAACATGTTGAATTGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATTCCACAGATGTTGAACCAGAGCCATTAGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGACGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATGCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAGTTAGGAGTCAAGACTCAGTTATGTTTTTAGTTGCATGATATAATATGTCTTTATTTTATGCTGATGACCTTAAAATGAAGAGTAAAAAGAAAGGAGATTTCAAAATGTGTAGCTCAACTAAGATATTAGTACATTGCACTTTTGTATGCAACCTTGTACATGTTGTGCAATTATTCAATTGCATGATGTATGCACGTAGTTTTGTATCGAGTCCTTGTGTTTTGAATAGTTTTACTTGCCTTGTTTAAAAGGAAACAAGAACAAGTAAATTCAGTACCAAATAGACTCAATATGGGAGAGTATAACACACGGACTAAGTTTTATCAAGGAGCTTCCAATAATTTTAATATAGAATTTTGGCAAT
Coding sequences of Glyma.18g091000
>Glyma.18g091000.1 sequence-type=CDS polypeptide=Glyma.18g091000.1.p locus=Glyma.18g091000 ID=Glyma.18g091000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTGGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATTCCACAGATGTTGAACCAGAGCCATTAGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGACGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATGCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG

>Glyma.18g091000.2 sequence-type=CDS polypeptide=Glyma.18g091000.2.p locus=Glyma.18g091000 ID=Glyma.18g091000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG

>Glyma.18g091000.3 sequence-type=CDS polypeptide=Glyma.18g091000.3.p locus=Glyma.18g091000 ID=Glyma.18g091000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG
Predicted protein sequences of Glyma.18g091000
>Glyma.18g091000.1.p sequence-type=predicted peptide transcript=Glyma.18g091000.1 locus=Glyma.18g091000 ID=Glyma.18g091000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEEKVEPLDSTDVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNAVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEMSDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF*

>Glyma.18g091000.2.p sequence-type=predicted peptide transcript=Glyma.18g091000.2 locus=Glyma.18g091000 ID=Glyma.18g091000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSEHAEMSDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF*

>Glyma.18g091000.3.p sequence-type=predicted peptide transcript=Glyma.18g091000.3 locus=Glyma.18g091000 ID=Glyma.18g091000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEMSDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF*






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