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Report for Sequence Feature Glyma.18g090400

Feature Type:gene_model
Chromosome:Gm18
Start:8959131
stop:8962600
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g090400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55200.1AT Co-chaperone GrpE family protein JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0030150GO-bp protein import into mitochondrial matrix EnsemblGenomesN/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0001405GO-cc presequence translocase-associated import motor EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0000774GO-mf adenyl-nucleotide exchange factor activity EnsemblGenomesN/AIEA
GO:0000774GO-mf adenyl-nucleotide exchange factor activity JGI N/AIEA
GO:0042803GO-mf protein homodimerization activity EnsemblGenomesN/AIEA
GO:0042803GO-mf protein homodimerization activity JGI N/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051087GO-mf chaperone binding EnsemblGenomesN/AIEA
GO:0051087GO-mf chaperone binding JGI N/AIEA
KOG3003 KOG Molecular chaperone of the GrpE family JGI N/AIEA
PTHR21237Panther GRPE PROTEIN JGI N/AIEA
PTHR21237:SF6Panther JGI N/AIEA
PF01025PFAM GrpE JGI N/AIEA

Expression Patterns of Glyma.18g090400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g090400 not represented in the dataset
Glyma.18g090400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g090400
ParalogEvidenceComments
Glyma.08g322000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g090400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g10120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g090400
>Glyma.18g090400.1 sequence-type=CDS polypeptide=Glyma.18g090400.1.p locus=Glyma.18g090400 ID=Glyma.18g090400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGCTTACAGGGTTTTGTCCCGTTCCTCTGCCATCCTTTCTCGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGCTGATTCCGGTTCAAACCAATTTTCTGAATTCATCATTGACTTCGAGATTCGGGTTTTCTTCAACGGCCTCGCATGAGCATGCAAGTGAAGAAGCAAAGGTATCTGATCAGTCTGAACAAGCTGAAGCTGCGGATCAAACCAAAGAATCAGATGTAGAGAGTGAATGTGATCTGTCCAGGGATGATTTGATAAAGCTTGTTGCTGAGAAGGAACAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTTCTGCGAACTTATGCAGAGATGGAGAATGTCATGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGACAACTTTTCAAAAATTGAATCTCCTGAGGAGTCTTCTGAAGCAGCACAACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGTACTCAAAAAGTTTGGTGTGGAAAAATTTGATCCTACAAATGAGCCATTTGATCCACACATGCACAATGCCATCTTCCAAATCCCTGATGCTTCGAAGGCCCCTGGCACTGTTGGAGTTGTTCTGAAGGCAGGATATAAGCTCTATGATCGTGTTCTTCGTCCGGCAGAAGTTGGTGTAACTCAAGAAGTGGAGGATAACAAAGCAGCTGAGTGA
Predicted protein sequences of Glyma.18g090400
>Glyma.18g090400.1.p sequence-type=predicted peptide transcript=Glyma.18g090400.1 locus=Glyma.18g090400 ID=Glyma.18g090400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFAYRVLSRSSAILSRSFTLFSVSRNSQPFSTTLSNNFHSLLHPSPNKLIPVQTNFLNSSLTSRFGFSSTASHEHASEEAKVSDQSEQAEAADQTKESDVESECDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKDNFSKIESPEESSEAAQLLKTLLEGVEMTEKQLAEVLKKFGVEKFDPTNEPFDPHMHNAIFQIPDASKAPGTVGVVLKAGYKLYDRVLRPAEVGVTQEVEDNKAAE*






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