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Report for Sequence Feature Glyma.18g086800

Feature Type:gene_model
Chromosome:Gm18
Start:8617935
stop:8620396
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g086800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55510.1AT Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein JGI N/AIEA
GO:0033365GO-bp protein localization to organelle EnsemblGenomesN/AIEA
GO:0045039GO-bp protein import into mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0071806GO-bp protein transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0042721GO-cc mitochondrial inner membrane protein insertion complex EnsemblGenomesN/AIEA
KOG3225 KOG Mitochondrial import inner membrane translocase, subunit TIM22 JGI N/AIEA
PTHR14110Panther MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 JGI N/AIEA
PF02466PFAM Tim17/Tim22/Tim23/Pmp24 family JGI N/AIEA

Expression Patterns of Glyma.18g086800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g086800
ParalogEvidenceComments
Glyma.08g323000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g086800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g09940 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g086800
>Glyma.18g086800.1 sequence-type=CDS polypeptide=Glyma.18g086800.1.p locus=Glyma.18g086800 ID=Glyma.18g086800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCGGATGTAACAGTTAATTCGGTTAGTGATGTGAACAATGCTCCCAATCATACAAAATCTGTAGGTCCTTCCTCTACTCCGTCGCTCACGGCTTCCCTTCTTCTCCCTGCCGCCACTAGCACTGCTTGTGGCGCCCTCACCGGCTCCCTTTTCGGCTATGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATAGAAGCAGGATCTAATGCTAAGACATTTGCAATTTTATCCGGAGTTGATAGTTTGGTTGTCTGCATATTGGGAAGACTTCGAGGAAAGGATGATGCCATTAATGCTGGGGTAGCTGGATGCTGCGCTGGTCTTGCTACAAGTTTTCCTGGTACACCCCAATCACTTCTACAGAGCTGCATTGCTTATGGGGCACTTTCTTTTATCATTGAAGGGTTAACCAAGCAACGATCTGCACTTGCATATCCCATGTCCAAGAAAACAAGTGTACGCAACCAGGGTATAATTCCTACATCTCATTGA
Predicted protein sequences of Glyma.18g086800
>Glyma.18g086800.1.p sequence-type=predicted peptide transcript=Glyma.18g086800.1 locus=Glyma.18g086800 ID=Glyma.18g086800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASDVTVNSVSDVNNAPNHTKSVGPSSTPSLTASLLLPAATSTACGALTGSLFGYGAGLIKKKGFKGSFIEAGSNAKTFAILSGVDSLVVCILGRLRGKDDAINAGVAGCCAGLATSFPGTPQSLLQSCIAYGALSFIIEGLTKQRSALAYPMSKKTSVRNQGIIPTSH*






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