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Report for Sequence Feature Glyma.18g084800

Feature Type:gene_model
Chromosome:Gm18
Start:8351952
stop:8354487
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g084800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59240.1AT Ribosomal protein S8e family protein JGI N/AIEA
GO:0000462GO-bp maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0022627GO-cc cytosolic small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG3283 KOG 40S ribosomal protein S8 JGI N/AIEA
PTHR10394Panther 40S RIBOSOMAL PROTEIN S8 JGI N/AIEA
PF01201PFAM Ribosomal protein S8e JGI N/AIEA

Expression Patterns of Glyma.18g084800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g084800
ParalogEvidenceComments
Glyma.08g325000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g084800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g09430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g084800
>Glyma.18g084800.1 sequence-type=CDS polypeptide=Glyma.18g084800.1.p locus=Glyma.18g084800 ID=Glyma.18g084800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACCGGCGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTATCAAGCAACAAGACGGTTAGGAGGATTAGGGTTCGCGGTGGGAACGTGAAGTGGCGCGCTTTGAGGCTTGATACTGGGAACTACTCTTGGGGGAGTGAGGCTGCAACCCGCAAGACAAGGATTCTTGATGTGGTGTACAATGCATCCAACAATGAGCTTGTTAGGACTCAGACATTGGTCAAGAGTGCCATTGTTCAGGTCGATGCAGCACCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGAGGTTGGCCGCAAGAAGAAGAGTGCAGCAGCTTCTGCCAAGAAGGAAGGGGAGGATGGTGAAGCTGCAACTGAGGAGGTGAAAAAGAGTAACCATGTTTTGAGAAAATTAGAAAAGCGAAAGCAGAACCGAGTTCTTGATCCTCACATTGAAGAACAATTCGGAGGTGGTCGCCTTTTGGCTTGTATCTCATCTCGACCTGGCCAATGTGGTCGTGCTGATGGATATATATTAGAGGGAAAAGAGCTGGAATTTTACATGAAGAAGCTTCAGAAGAAGAAGGGCAAGGGTGCTGCTTAA
Predicted protein sequences of Glyma.18g084800
>Glyma.18g084800.1.p sequence-type=predicted peptide transcript=Glyma.18g084800.1 locus=Glyma.18g084800 ID=Glyma.18g084800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAATRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEVGRKKKSAAASAKKEGEDGEAATEEVKKSNHVLRKLEKRKQNRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA*






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