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Report for Sequence Feature Glyma.18g083100

Feature Type:gene_model
Chromosome:Gm18
Start:8148691
stop:8148939
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g083100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32040.1AT KNOTTED1-like homeobox gene 5 JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PTHR11850Panther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS JGI N/AIEA
PTHR11850:SF15Panther JGI N/AIEA
PF03791PFAM KNOX2 domain JGI N/AIEA

Expression Patterns of Glyma.18g083100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g083100 not represented in the dataset
Glyma.18g083100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g083100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g09261 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g083100
>Glyma.18g083100.1 sequence-type=CDS polypeptide=Glyma.18g083100.1.p locus=Glyma.18g083100 ID=Glyma.18g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCAGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGTTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGTACAGCGATAGTCTTTTTAGTGATTGTTACATCTCAACATAAAAATAAACCAATAAAGGTTGGGTACATGATAAAATGGAAATCAGTACCAGAAAATGATAAAATGGAAATAACTTGA
Predicted protein sequences of Glyma.18g083100
>Glyma.18g083100.1.p sequence-type=predicted peptide transcript=Glyma.18g083100.1 locus=Glyma.18g083100 ID=Glyma.18g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQSHYVLLLCSFKEQLQQHVRVHAMEAVMVCWEIEQSLQSLTGTAIVFLVIVTSQHKNKPIKVGYMIKWKSVPENDKMEIT*






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