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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13110.1 | AT | serine acetyltransferase 2;2 | JGI | N/A | IEA |
| GO:0006535 | GO-bp | cysteine biosynthetic process from serine | EnsemblGenomes | N/A | IEA |
| GO:0006535 | GO-bp | cysteine biosynthetic process from serine | JGI | N/A | IEA |
| GO:0019344 | GO-bp | cysteine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009001 | GO-mf | serine O-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0009001 | GO-mf | serine O-acetyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG4750 | KOG | Serine O-acetyltransferase | JGI | N/A | IEA |
| PTHR23416 | Panther | SIALIC ACID SYNTHASE-RELATED | JGI | N/A | IEA |
| PTHR23416:SF18 | Panther | JGI | N/A | IEA | |
| PF00132 | PFAM | Bacterial transferase hexapeptide (six repeats) | JGI | N/A | IEA |
| PF06426 | PFAM | Serine acetyltransferase, N-terminal | JGI | N/A | IEA |
| CYSTSYN-PWY | SoyCyc9 | L-cysteine biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-6936 | SoyCyc9 | seleno-amino acid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-63283 | SoyCyc9-rxn | serine O-acetyltransferase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SAT1 | serine O-acetyltransferase 1 |
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Glyma.18g080000 not represented in the dataset |
Glyma.18g080000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g327400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g08910 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g080000.1 sequence-type=CDS polypeptide=Glyma.18g080000.1.p locus=Glyma.18g080000 ID=Glyma.18g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATGTTCTGGCTCTAGGGCGCTTCCTCACTTCCCCCTTATATAAGACTTCCCCTCTCACTCCCTCCCCAATCCAATTCACACCCATTTTTCTTCATCCCCCAAAGTTTCAATCTTTGTATTCAATTCACCCTTTCTCTCTCTCCATGGCCACTTGTGTTGATGCCCCAACCCCTCTTTCTCGGAAGCCTAACGGGTCCCAATCCGATGATCGTTCCTTCAATTACATGAAATTCTGCCGACCCACTTTCTCTGATCGCGTTCCCTGCATACCCATTTGCAAGAATCGTGACACTGCCTTCACACGCGTGGAGGAGTTTGACACATGTGTGGAGGATAATGATGATATTGAGGTTGAGGTTGTGGAGGGTGTTGATCTTTGGTTGAAGATTCAAGAGGAGGCAAGGTTAGATGTTGATCAAGAACCAATTTTATCCAGCTACTATTTCAGTTCCATTTTGTCTCACAAATCTTTGGAGAGTGCCTTGGCCAACCACCTCTCCACAAATTTGAGCAGCTTGAGCCTTCCAAGCAGCACCCTTTTTGACCTTTTCATGGGTGTTTTGGTTGATGATGGAGATGATGACATCGTAGGTGCTGTGAAGGATGATTTGATAGCTGTTAAGGAGAGGGACCCTGCTTGCATAAGTTATGTGCATTGCTTGCTGAATTTCAAGGGTTTTTTGGCATGTCAGGCTCATAGGATTGCTCACAAATTGTGGCTTCAAGGGAGGAAGGTCTTGGCGCTGTTGATTCAGAATAGGGTGTCTGAGGTTTTTGCTGTGGATATTCACCCTGGTGCCAAAATTGGACGTGGGATTTTGCTGGATCATGCAACAGGACTTGTTGTGGGGGAGACTGCAGTTATTGGGAATAATGTGTCAATTTTGCATAATGTGACATTGGGAGGGACTGGTAAGGCAAGTGGGGATAGACACCCTAAGATTGGTGATGGGGTGTTGATAGGTGCAGGGACTTGTATTTTGGGGAACATTAAGATTGGTGATGGAGCTAAGATTGGTGCTTGTTCTGTTGTGTTGAAGGAAGTGCCACCAAGGACTACTGCTGTTGGGAACCCTGCTAGGTTGGTTGGAGGGAAGGATAACCCTATTAAATTGGATAAGATGCCTAGTTTTACCATGGACCATACTTCATGGTCTGATTATGTTATATAG
>Glyma.18g080000.1.p sequence-type=predicted peptide transcript=Glyma.18g080000.1 locus=Glyma.18g080000 ID=Glyma.18g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNVLALGRFLTSPLYKTSPLTPSPIQFTPIFLHPPKFQSLYSIHPFSLSMATCVDAPTPLSRKPNGSQSDDRSFNYMKFCRPTFSDRVPCIPICKNRDTAFTRVEEFDTCVEDNDDIEVEVVEGVDLWLKIQEEARLDVDQEPILSSYYFSSILSHKSLESALANHLSTNLSSLSLPSSTLFDLFMGVLVDDGDDDIVGAVKDDLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGRGILLDHATGLVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGACSVVLKEVPPRTTAVGNPARLVGGKDNPIKLDKMPSFTMDHTSWSDYVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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