SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g075300

Feature Type:gene_model
Chromosome:Gm18
Start:7096946
stop:7102971
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.18g075300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60620.1AT ATRPAC43,RPAC43 JGI N/AIEA
2.7.7.6EC DNA-directed RNA polymerase JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity JGI N/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
K03027KEGG Transcription machinery JGI N/AIEA
KOG1521 KOG RNA polymerase I and III, subunit RPA40/RPC40 JGI N/AIEA
PTHR11800PantherFam DNA-DIRECTED RNA POLYMERASE JGI N/AIEA
PTHR11800:SF13PantherFam DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 JGI N/AIEA
PF01000Pfam RNA polymerase Rpb3/RpoA insert domain JGI N/AIEA
PF01193Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain JGI N/AIEA

Gene model name correspondences to Glyma.18g075300 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g08360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g075300
>Glyma.18g075300.1 sequence-type=CDS polypeptide=Glyma.18g075300.1.p locus=Glyma.18g075300 id=Glyma.18g075300.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGTCGTCTTCGTCGGAAGATGAATCTATGTCGGAACAGAGCAATGAATTAGGACTTGATTTCATCTTGAGCTTGGACAATGTTCCATCAAAGCTCCCTCCACACCTCGAACTCTTCAAAACACGCGTTCTTTGCAACAATGATGCTCCTGTGCATACGGATACTGTACAATATTCTGGTGCTTATGCTATTTTAGGAGTTGATAATAGTGTGCGTTTGGATAGCTTCTGTGAAAACTTCAAGGTTGAAGTGAAGCGACTTACGGATAGCGATATAGAATTTGATATGATTGGAATCGATCCGGCAATTGCCAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCAAACAATACATCAGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCATTCCAATTCGTGCTGATCCCAGGCTATTTGAATATCCAGAAAATGCAGGAGATGACAAGAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTAAAATCAGATAAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTCACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAACAATTCAATTGGTCTTACATATTCGGATATTATATTGGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCACATGCGGTTAAAGGCATTGGTAAGACACATGCAAAATGGTCCCCAGTTGCCACTGCTTGGTATCGGATGCTTCCGGAGGTTGTACTCTTGGAAGCTGTTGAGGATGAGCTGGCTGAAGAATTAAAAAATAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGCCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCTCCTGAAGTGCTATTTACTGAAGCTGTGAAGATTTTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA
Predicted protein sequences of Glyma.18g075300
>Glyma.18g075300.1.p sequence-type=predicted peptide transcript=Glyma.18g075300.1 locus=Glyma.18g075300 id=Glyma.18g075300.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSSSSSEDESMSEQSNELGLDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo