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Report for Sequence Feature Glyma.18g071500

Feature Type:gene_model
Chromosome:Gm18
Start:6710390
stop:6727548
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g071500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13330.1AT proteasome activating protein 200 JGI N/AIEA
GO:0010499GO-bp proteasomal ubiquitin-independent protein catabolic process EnsemblGenomesN/AIEA
GO:0010952GO-bp positive regulation of peptidase activity EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0016504GO-mf peptidase activator activity EnsemblGenomesN/AIEA
GO:0070577GO-mf lysine-acetylated histone binding EnsemblGenomesN/AIEA
GO:0070628GO-mf proteasome binding EnsemblGenomesN/AIEA
KOG1851 KOG Uncharacterized conserved protein JGI N/AIEA
PF11919PFAM Domain of unknown function (DUF3437) JGI N/AIEA

Expression Patterns of Glyma.18g071500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g071500
ParalogEvidenceComments
Glyma.08g336400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g071500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g07950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g071500
>Glyma.18g071500.1 sequence-type=CDS polypeptide=Glyma.18g071500.1.p locus=Glyma.18g071500 ID=Glyma.18g071500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATCTCTACAATGCATGGCTTCCGCCGCCGGTGGCGGCTCAGACCGCCGGCGAGCGAGACTCCTTCGCCCGCGTCATCGCCGCCGTCAAGTCCGCCTTCCGCTCCGATGATCCCGATTCCGTCTTCTCCACTCTCAAATTCATCTCCGTCCTCGACCTTTTCATAAAGGCAAAAAGTGATGTATCTTTGGAGGATGTCTGTAACCTTATTCAGATGGGCCTTGAGATATTTCATGTGTCCCGTAATAAGCTTTATGCCCAGGTTAGATGGGGAAATTTATTGGTCAGAATACTCAACAAATATAGGAAAAAGATTTCACTGACTATTGAATGGAGGCCACTGTATGATACACTGGTTAGCACACATTTTACTAGAAGTACAGGTCCAGAAGGTTGGAGAATAAGACAACGACATTTTGAAACTATAACTTCCCTTGTTCAGTCCTGCCGAAGATTCTTCCCATCAGGTTCTGCCTTTGAGATATGGTCTGAGTTTAAATCTTTATTGCAAAACCCATGGCATAATTCATCCTTTGAAGGTTCTGGATTTGCAAGACTGTTTCTCCCAACAAATCTTGATAATCAGGATTTTTATACACAGGATTGGATAACTGAGTGTATAGACTTGTGGGAATCTATACCAAATTGCCAATTCTGGAACAATCAATGGGCAGATGTTATAGCTCGTGTTGTAAAAAATTACCACAATGTTGATTGGGAGTGCTTCTTGCCTTTACTTTTTGCTAGATACTTGAATATGTTTGAGGTACCTGTTGCAAATGGAAGTGGATCATATCCCTTTTCGCTGGATGTCCCAAGAAACACTAGGTTTTTGTTCTCCAATAAAACTTCCACTCCTGCAAAGGCTATTGCCAAATCAATAGTATATTTACTAAAACGTGGTAGTTCATCACAAAAGCACTTTGAGAAATTGATCAACATTTTGGAACAATATTATCATCCCTCAAATGGGGGTCGATGGACCTATGCATTGGAGCGGTTTTTGTTTCATTTGGTGTTTCAATTTCAAAAGCGTCTACAGAATGAACAGCTGGGCATAAATAATAGCAGACCCACCGAACAGCATCTTGGGGAATCAGAGAGGGTTTTCTTTGTTAACTCAGTGCTAAAGTTAATTGACCGTGGTCAATACAGCAAAAATGAGCATCTCTCCGAGACAGTTGCTGCAGCAACTTCTATACTGTCCTATGTAGAACCCTCATTGGTTCTGCCATTTGTGGCATCTCGGTTTCAAATGGCCCTTGAGACGATGACTGCTACCCACCAATTGAAAATTGCAGTTATGTCAGTGGCATTTGTTGGGCGTTCACTATTTTATACATCTGTATCAGTTTCCTCCATGAAACCAATTGATCTTGGTGGTGGTGATGAAGCATTCATTGATCTTGTGGGGGTTTCATTATCCAATGCATTACTTGGCATGGATGCTAATGACCCTCCAAAAACCTTGGCTACCATGCAATTAATTGGTTCCATATTTTCAAATTTGGCTTTATTGGATGATAAAATTGATGACCTATCATTTATGCCGATGATCCGCTTTTCAGAGTGGCTGGATGAGTTCTTATGCCGTCTATTTTCCTTACTTCTACACTTGGAACCCAGCAGTGTTTTAAATGAAGGTCTGCAATCATCATCAGCAACAGGAACTTTCCTGGTTGACGATGGTCCATACTACTTCTGTGTGCTTGAAATTCTGTTTGGGAGGCTTTCACAATCACTGTATAATCAGGCTTTGAAGAAAATTTCCAAGTTTGTGAGGACAAATATTCTTCCTGGTGCTGTTGCAGAGGTTGGACTGCTTTGTTGTGCGTGTGTTCACTCGAACCCAGAAGAAGCAGTTAGTCAACTTGTTGAGCCAATATTACTGTCTGTGATATCTTCTTTGAAAGGAACACCACGCACTGGATTTGGAGGAGGAACTTTTGATGCTTCTGCTTCATCAAAGGTTAGATCCACAATTTCACCAGCTCTTGAGGCTTCAATTGACTATCAACTTAAGATATTGTCAGTTGGCATCACATATGGAGGTCCAGCGCTCCTCCATTACAAGGATCAATTCAAAGAAGCTATCTTCTTGGCTTTTGACTCACCATCTTGGAAGGTTAATGGGGCTGCTGATCATCTTCTTCGGTCCCTTCTCGGAAGTCAGATTCATTATTATCCAATAGATCAGTATAAGTGTGTTCTTAGTCACCCTGATGCTGTTGCTCTAGAAGAATGGATTAGCACAAAAGATTTTTCCACTGATGAAAGGTTGATCCCAAAGTGGCATATTCCTTGTGATGAAGAAGTTCATTTTGCAAATGAGCTTTTAGACATTCACTTCAAGTCTGCTTTGGATGATCTGTTGAAAATATGCCAGACTAAAATCCATGCTGACCAAGGAGATGAGAAAGAGCACTTGAAAGTGACTCTTTTGCGCATTGAATCATCGTTGCAAGGACTTTTTTCTTGTTTGCCCGATTTTGTCCCAGACTCCAGGAATGGAATGGTTGAAGATTCAAACCATATGTTTTTAATTGCTGGGGCAACAGGTTGTACTGTTGGTAGTACTGCTCTGAGAGAAAAAGCTACTGAGGTTGTACATGCAGCCTGCAAATATGTCCTGGAGAAAAAATCAGATGACAGCATCCTGTTGATACTTATTATTCGCATCATTGATGCTTTAGGAAACTATGGAAGTTTGGAGTATGATGAGTGGTCTAGTCACAGGCAGGCTTGGAAATTAGAATCTGCTGCCATAATAGAACCCCCCATTAATTTCATTGTGTCATCTCATTCTAAAGCAAAGAAAAGACCTAGGTGGGCTCTTATCGACAAGGCATTTATGCACAATACATGGAGGTCTTCGCAAGCATCCTATCATCTTTACCGTACAAGTGGGAATTTCTGCCCATCTGATCATGTGACTATGTTGATGGATGATTTGTTGAGTCTCTCTTTGCATAGCTATGAAACTGTCCGCCTGCTTGCAGGGAAATCTCTAGTGAAGCTGATCAAGAGATGGCCATCTATGATTTCAAAATGTGTTATCACTCTTACCCATAACTTGCAGGATCTCAATGCCAAGGAATATGCAGTGTTGGGTTCCTGTTCAGTCCTTGCCTCACAAACAGTTCTCAAGCATTTGACAACGGATCCAAAGTCATTCTCTTCATTTATCTTGGCAATTCTTTCAAGTTCGCATCATGAATCGTTGAAAGCTCAGAAAGCAATTAATGAGCTTTTTGTGAAGTACAACATTCAATTTTCTGGAGTATCTAGAAGCTTTTTCAGGATCTCAGACAAAGAAAATCATACTGGTGGACTGGGGTTTTCAGATTTGGTTTCTCAGATTGGCTCCATGAGTTTTGATTCTACTGGCTTGCATTGGAGGTATAACTTGATGGCTAATAGAGTGCTGCTCCTGCTGGCTTTGGCATCTCAGAACCATCCAAATTCATCATCTAAAATTCTGAGTGAAACTGCTGGACACTTCCTGAAGAATTTGAAAAGTCAACTTCCTCAGACAAGGATACTTGCAATTTCAGCTTTGAATACACTATTAAAAGAATCACCATATAAGCTGTCTCATGGTGAGAAATCTGCTGTACTTGAGGATTTGCAAGGCCATGTCAAATCATCACTTGAAGGAACTTTAACTCCAACTTTTCAGGAAGAGGGTTTCTTCAATGAGACATTGACTAGTCTTTCTCATGTTCATATAATAACTGATAGTGAAACTGCTTCAAGAGGAGGTCAGGGAGATTCAAGTTTCCAAAGCTTAGCAGACAAATCCATTACTCGTTTTTATTTTGAATTTTCGGCTTCATGGCCTCGAACGCCAAGTTGGATCTCCTTTTTAGGAAGTGATACATTTTACTCAAATTTTGCTCGTATTTTTAAACGACTAGTACAAGAATGTGGCATGCCTGTTGTATTGGCTCTTAAAGGTGCAGTAGATGAGTTTACAATTGCTAAGGAGAGGTCTAAACAATGTGTAGCTGCTGAAGCATTAGCGGGTGTGCTTCATTCTGATATTGATGGTCTATCAGGAACATGGGAAAGTTGGCTGATGCCTCAGTTGAAGAACATCATTTTAGCCCAATCTGTTGAATCAGTTTCAGAGTGGGCATCTTGCATACGATATGCAGTTACCGGTAAAGGAAAGTATGGAACAAGAGTTCCTCTTTTGAGACAGAAAATTCTGGATTCTTTGATGACACCTTTACCTCCAACAGTAGCTACCACAATAACAGCCAAGCGATATACTTTTCTGGCTGCTGCACTTATAGAAATATCCCCACAGAAAATGCCAGTAGCAGAAGTCCAGCTCCACAATACACTTCTGAAGGAAGTTCTTGGTAATATGTGCCACTCATCAGCCCAAGTGAGGGAGGCTCTAGGGGTTACCCTTTCTATATTGTGCTCTAACATTAGGCTCTATCATTCAAGCCGTCATGATAATGCACAGGATGAGAGAAACAACGATGTTGATAGTTTGATGAAAGATGAAAGCTGGGTTCAGTTTCTTACAGAGCGAGCAGCTGAAGCAGTTGTTAACATTCAGATTGCTACCCAATCAGATAAAGTAGTGAATCCTGTAGATACAAATTCTCAAAATGGGCATCTAGATGGTGATTCACAAGATTGCATTAAATGGATGGAAACGCTACTCTACTTCATCATCTCATCATTGAAGTCTGGGAGATCCTCATATCTACTCGACGTGCTTGTGGGGCTTCTATATCCTGTGATTTGCTTGCAGGAAACATCAAATAAGGATTTGTCAACATTAGCCAAGGTAGCATTTGAATTGCTCAAGTGGATGATTGTTTGGGAACCTCACCTTCAGAAGGCTGTATCTGTGATTCTTTCTGCTGCCAATGATTCCAACTGGCGAACTAGATCTGCTACATTGACATATCTGCGCACATTCATGTACAGGCACACTTTTACTGTCTCAAGTTCAAAGAAGCAAGAGATTTGGAGAACTGTTGAGAAGTTACTAGTAGACAATCAAATTGAGGTAAGAGAACATGCTGCAGCAGTTTTAGCAGGCTTAATGAAGGGTGGAGATGAAGATCTTGCTAGAGATTTCCGTGATAGAGCTTATAGGGAGGCAAATATTGTACAGAAGAGAAGAAAGTCGAGAAATGCAAGTTCTGGATCATCAATAGCATCTGTTCATGGTGCTGTACTAGCTTTGGTAGCTTCTGTATTATCAGCCCCATATGACATGCCCAGTTGGTTGCCTGATCATGTTACACTACTTGCTCGCTTCAGTGGGGAGCCATCACCCGTGAAATCTACAGTTACTAAAGCAGTTGCAGAGTTCCGGCGGACCCATGCTGATACATGGAATGTTCAGAAAGAATTTTTTACTGAAGAGCAACTTGAGATTCTGGCAGATACATCCTCGTCGTCGTCATATTTTGCTTGA
Predicted protein sequences of Glyma.18g071500
>Glyma.18g071500.1.p sequence-type=predicted peptide transcript=Glyma.18g071500.1 locus=Glyma.18g071500 ID=Glyma.18g071500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHLYNAWLPPPVAAQTAGERDSFARVIAAVKSAFRSDDPDSVFSTLKFISVLDLFIKAKSDVSLEDVCNLIQMGLEIFHVSRNKLYAQVRWGNLLVRILNKYRKKISLTIEWRPLYDTLVSTHFTRSTGPEGWRIRQRHFETITSLVQSCRRFFPSGSAFEIWSEFKSLLQNPWHNSSFEGSGFARLFLPTNLDNQDFYTQDWITECIDLWESIPNCQFWNNQWADVIARVVKNYHNVDWECFLPLLFARYLNMFEVPVANGSGSYPFSLDVPRNTRFLFSNKTSTPAKAIAKSIVYLLKRGSSSQKHFEKLINILEQYYHPSNGGRWTYALERFLFHLVFQFQKRLQNEQLGINNSRPTEQHLGESERVFFVNSVLKLIDRGQYSKNEHLSETVAAATSILSYVEPSLVLPFVASRFQMALETMTATHQLKIAVMSVAFVGRSLFYTSVSVSSMKPIDLGGGDEAFIDLVGVSLSNALLGMDANDPPKTLATMQLIGSIFSNLALLDDKIDDLSFMPMIRFSEWLDEFLCRLFSLLLHLEPSSVLNEGLQSSSATGTFLVDDGPYYFCVLEILFGRLSQSLYNQALKKISKFVRTNILPGAVAEVGLLCCACVHSNPEEAVSQLVEPILLSVISSLKGTPRTGFGGGTFDASASSKVRSTISPALEASIDYQLKILSVGITYGGPALLHYKDQFKEAIFLAFDSPSWKVNGAADHLLRSLLGSQIHYYPIDQYKCVLSHPDAVALEEWISTKDFSTDERLIPKWHIPCDEEVHFANELLDIHFKSALDDLLKICQTKIHADQGDEKEHLKVTLLRIESSLQGLFSCLPDFVPDSRNGMVEDSNHMFLIAGATGCTVGSTALREKATEVVHAACKYVLEKKSDDSILLILIIRIIDALGNYGSLEYDEWSSHRQAWKLESAAIIEPPINFIVSSHSKAKKRPRWALIDKAFMHNTWRSSQASYHLYRTSGNFCPSDHVTMLMDDLLSLSLHSYETVRLLAGKSLVKLIKRWPSMISKCVITLTHNLQDLNAKEYAVLGSCSVLASQTVLKHLTTDPKSFSSFILAILSSSHHESLKAQKAINELFVKYNIQFSGVSRSFFRISDKENHTGGLGFSDLVSQIGSMSFDSTGLHWRYNLMANRVLLLLALASQNHPNSSSKILSETAGHFLKNLKSQLPQTRILAISALNTLLKESPYKLSHGEKSAVLEDLQGHVKSSLEGTLTPTFQEEGFFNETLTSLSHVHIITDSETASRGGQGDSSFQSLADKSITRFYFEFSASWPRTPSWISFLGSDTFYSNFARIFKRLVQECGMPVVLALKGAVDEFTIAKERSKQCVAAEALAGVLHSDIDGLSGTWESWLMPQLKNIILAQSVESVSEWASCIRYAVTGKGKYGTRVPLLRQKILDSLMTPLPPTVATTITAKRYTFLAAALIEISPQKMPVAEVQLHNTLLKEVLGNMCHSSAQVREALGVTLSILCSNIRLYHSSRHDNAQDERNNDVDSLMKDESWVQFLTERAAEAVVNIQIATQSDKVVNPVDTNSQNGHLDGDSQDCIKWMETLLYFIISSLKSGRSSYLLDVLVGLLYPVICLQETSNKDLSTLAKVAFELLKWMIVWEPHLQKAVSVILSAANDSNWRTRSATLTYLRTFMYRHTFTVSSSKKQEIWRTVEKLLVDNQIEVREHAAAVLAGLMKGGDEDLARDFRDRAYREANIVQKRRKSRNASSGSSIASVHGAVLALVASVLSAPYDMPSWLPDHVTLLARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKEFFTEEQLEILADTSSSSSYFA*






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