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Report for Sequence Feature Glyma.18g066900

Feature Type:gene_model
Chromosome:Gm18
Start:6167590
stop:6173086
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g066900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29680.2AT cell division control 6 JGI N/AIEA
GO:0006270GO-bp DNA replication initiation EnsemblGenomesN/AIEA
GO:0051301GO-bp cell division EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2227 KOG Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase JGI N/AIEA
PTHR10763Panther CELL DIVISION CONTROL PROTEIN 6-RELATED JGI N/AIEA
PTHR10763:SF7Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF09079PFAM CDC6, C terminal JGI N/AIEA

Expression Patterns of Glyma.18g066900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g066900 not represented in the dataset
Glyma.18g066900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g066900
ParalogEvidenceComments
Glyma.08g333800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g066900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g07444 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g066900
>Glyma.18g066900.2 sequence-type=transcript locus=Glyma.18g066900 ID=Glyma.18g066900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCTTCCTTCACTCCGTTACCAGATCCCATTTTCATTTTCTTCTTCAACCTTGAAAATCCTAATCCCATTTCTCTTCACGGTTCTCTCACCTCCAAAACAATGCCAGTCATCGCCGCCAAGCGCACGTTGCGATCTCACCCTTCCTCGCCCCCTCGCAAATCTCCCCGCCGATGCACAGCCGCAACCCCCAATTCCACCCCTACGAAAAACAGATTGGGTGGCGCCGACGAAAACCAAGCTGATCCGGCAGCTGTGAAACCCAAGTGGAATCCCAAAGATGGTGAGCAATTGAAGAGGGCAAAAATGGCACTGCACTTGTCCACTGCACCGTCTTCGGTTGTGTGCCGCGAGGAGGAGCAGAATATGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCTGGGAGTCTCTACATATGCGGGTGTCCCGGAACCGGGAAATCATTATCTATGGAGAAAGTGAAAGATAAATTACTCAATTGGGCTAAGGAGGAAGGTCTTCCACTGCCAGATGTTTTGTCTGTAAATTGTACAACCCTTACCAATACATCAGATATTTTCACTAAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCAGCCTTGCCCTTGCAGCAGCTTCAGAACATGTATTCTCAGAAATCATCTGTCAAGAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATAACCAAAGACAGAGCCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGATCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTGAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAATTTCCTTACAGTGTTTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTAGCTGCAACTTCTGGAGACATGCGGAATGCTCTTTGTATATGCGGGAGTGCAATAGAGATGCTTGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACCTCATTGGAAGAGATATCATCCTCAAGACAAAATTTTGCAACAGCTCCTGATTTTATGAAAAAACGAGAATTTGATACTGTAAAGACTGATCATATGGCTCGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATGCAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTTTAATTCCTCCAGCGGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCACCTAAAATAGACGAGGGTGATATTACGTTTGCATTGCAGGGAATACGGTTTTTTCAAAACTGCCTTTAATGATTCTACTGATAGACTGGTAGTTTTCACTCAGCTTGACGTGAGATCAAAGACTCTTCTTTAGATTAAGATAAGTTTATTTGGTTCAAACCGGTGTCTTCAACTATTCATTGTATGAAGCGGTATACTCGAAGCATGGAGTTGAAATCACTTGTGCAAAATTTTCACCCAATAAGCAAAAGCTGTTGGAGAAtttttttttttttttgctattttattttttCAAGAGCTGAGTTGCATTGTGTAGTTTATTTAGCTGATCGCACTTAGTAGTAATAAGTTATAGGGATAAGGTTTTATTGGTTTATTTTCTCAGGAGCAGAAAATAGCTATAGATACATTTATTTATACTAAAATTAATTCTCAAATGTAAACATGAATATGTATTATTGAAGTTGGGAGATTATAAGATATTCCTCTGAATGGTTGTAATCAAATGCCAAAATTAGTTTGAAAATTTAGTGAACTAGAAGTGAGATGGACTAAGCAAATATGATATGATGAATATATTAAGTTCTTCAAACTTCAATTTTGGTCTGAAGAG
Coding sequences of Glyma.18g066900
>Glyma.18g066900.1 sequence-type=CDS polypeptide=Glyma.18g066900.1.p locus=Glyma.18g066900 ID=Glyma.18g066900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGTCATCGCCGCCAAGCGCACGTTGCGATCTCACCCTTCCTCGCCCCCTCGCAAATCTCCCCGCCGATGCACAGCCGCAACCCCCAATTCCACCCCTACGAAAAACAGATTGGGTGGCGCCGACGAAAACCAAGCTGATCCGGCAGCTGTGAAACCCAAGTGGAATCCCAAAGATGGTGAGCAATTGAAGAGGGCAAAAATGGCACTGCACTTGTCCACTGCACCGTCTTCGGTTGTGTGCCGCGAGGAGGAGCAGAATATGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCTGGGAGTCTCTACATATGCGGGTGTCCCGGAACCGGGAAATCATTATCTATGGAGAAAGTGAAAGATAAATTACTCAATTGGGCTAAGGAGGAAGGTCTTCCACTGCCAGATGTTTTGTCTGTAAATTGTACAACCCTTACCAATACATCAGATATTTTCACTAAGCAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCAGCCTTGCCCTTGCAGCAGCTTCAGAACATGTATTCTCAGAAATCATCTGTCAAGAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATAACCAAAGACAGAGCCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGATCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTGAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAATTTCCTTACAGTGTTTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTAGCTGCAACTTCTGGAGACATGCGGAATGCTCTTTGTATATGCGGGAGTGCAATAGAGATGCTTGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACCTCATTGGAAGAGATATCATCCTCAAGACAAAATTTTGCAACAGCTCCTGATTTTATGAAAAAACGAGAATTTGATACTGTAAAGACTGATCATATGGCTCGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATGCAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTTTAATTCCTCCAGCGGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCACCTAAAATAGACGAGGGTGATATTACGTTTGCATTGCAGGGAATACGGTTTTTTCAAAACTGCCTTTAA

>Glyma.18g066900.2 sequence-type=CDS polypeptide=Glyma.18g066900.2.p locus=Glyma.18g066900 ID=Glyma.18g066900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGTCATCGCCGCCAAGCGCACGTTGCGATCTCACCCTTCCTCGCCCCCTCGCAAATCTCCCCGCCGATGCACAGCCGCAACCCCCAATTCCACCCCTACGAAAAACAGATTGGGTGGCGCCGACGAAAACCAAGCTGATCCGGCAGCTGTGAAACCCAAGTGGAATCCCAAAGATGGTGAGCAATTGAAGAGGGCAAAAATGGCACTGCACTTGTCCACTGCACCGTCTTCGGTTGTGTGCCGCGAGGAGGAGCAGAATATGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCTGGGAGTCTCTACATATGCGGGTGTCCCGGAACCGGGAAATCATTATCTATGGAGAAAGTGAAAGATAAATTACTCAATTGGGCTAAGGAGGAAGGTCTTCCACTGCCAGATGTTTTGTCTGTAAATTGTACAACCCTTACCAATACATCAGATATTTTCACTAAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCAGCCTTGCCCTTGCAGCAGCTTCAGAACATGTATTCTCAGAAATCATCTGTCAAGAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATAACCAAAGACAGAGCCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGATCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTGAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAATTTCCTTACAGTGTTTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTAGCTGCAACTTCTGGAGACATGCGGAATGCTCTTTGTATATGCGGGAGTGCAATAGAGATGCTTGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACCTCATTGGAAGAGATATCATCCTCAAGACAAAATTTTGCAACAGCTCCTGATTTTATGAAAAAACGAGAATTTGATACTGTAAAGACTGATCATATGGCTCGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATGCAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTTTAATTCCTCCAGCGGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCACCTAAAATAGACGAGGGTGATATTACGTTTGCATTGCAGGGAATACGGTTTTTTCAAAACTGCCTTTAA
Predicted protein sequences of Glyma.18g066900
>Glyma.18g066900.1.p sequence-type=predicted peptide transcript=Glyma.18g066900.1 locus=Glyma.18g066900 ID=Glyma.18g066900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPVIAAKRTLRSHPSSPPRKSPRRCTAATPNSTPTKNRLGGADENQADPAAVKPKWNPKDGEQLKRAKMALHLSTAPSSVVCREEEQNMVLEFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKDKLLNWAKEEGLPLPDVLSVNCTTLTNTSDIFTKQILGLNQTQGKKVSALPLQQLQNMYSQKSSVKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNEFPYSVFQQQALELCARKVAATSGDMRNALCICGSAIEMLEAEIRESACNLNTSLEEISSSRQNFATAPDFMKKREFDTVKTDHMARALSKTYRSPVVDTIQSLPHHQQIVLCSSMKHFRGAKKDAILGELYKSYVGVCKSCLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKIDEGDITFALQGIRFFQNCL*

>Glyma.18g066900.2.p sequence-type=predicted peptide transcript=Glyma.18g066900.2 locus=Glyma.18g066900 ID=Glyma.18g066900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPVIAAKRTLRSHPSSPPRKSPRRCTAATPNSTPTKNRLGGADENQADPAAVKPKWNPKDGEQLKRAKMALHLSTAPSSVVCREEEQNMVLEFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKDKLLNWAKEEGLPLPDVLSVNCTTLTNTSDIFTKILGLNQTQGKKVSALPLQQLQNMYSQKSSVKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNEFPYSVFQQQALELCARKVAATSGDMRNALCICGSAIEMLEAEIRESACNLNTSLEEISSSRQNFATAPDFMKKREFDTVKTDHMARALSKTYRSPVVDTIQSLPHHQQIVLCSSMKHFRGAKKDAILGELYKSYVGVCKSCLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKIDEGDITFALQGIRFFQNCL*






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