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Report for Sequence Feature Glyma.18g065600

Feature Type:gene_model
Chromosome:Gm18
Start:5986391
stop:5994548
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g065600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58870.1AT FTSH protease 9 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0004176GO-mf ATP-dependent peptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008237GO-mf metallopeptidase activity EnsemblGenomesN/AIEA
KOG0731 KOG AAA+-type ATPase containing the peptidase M41 domain JGI N/AIEA
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI N/AIEA
PTHR23076:SF6Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF01434PFAM Peptidase family M41 JGI N/AIEA
PF06480PFAM FtsH Extracellular JGI N/AIEA

Expression Patterns of Glyma.18g065600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g065600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g07280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g065600
>Glyma.18g065600.1 sequence-type=CDS polypeptide=Glyma.18g065600.1.p locus=Glyma.18g065600 ID=Glyma.18g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTACCCTTAGAGCATCACTTTCACTATCTCCCTCCCTTAACCCACACCAAATTGAAACCCTTTTCCCGCGCAAATTCTAGGGTTTCCCTTCCCCATATCGAGACCACCCTCCGTCGTTTCAACCCCTCTTCGTGTCGTTTCCGATGTCCAATTTCATCCAACGATTCGCTTAGGTTCGGTTTGAGGGGTGGCCACCGAACATCATGGGTGTGTCGTTCCGCCGGAGAACCCGATTCCGCGGCGGATTCCGGCGAGAAGAAAACCGGCAGCGACGACGACGCCGATTCGAACCGGAGAAAGGGCGGGTGGTGGTGGCGGTGGCGCCGGTGGCGGTGGCAGCCCCTGATTCAGGCTCAGGAAATTGGGGTCCTGCTCATGCAAATTGGGATTGCGTTTTTCGTTTTGCGGTTGCTCCGGCCCGGAGTTTCGCTACCCGGGTCGGATCCTCGGTCTCCGACTGTGTTTGTGAGTGTGCCTTATAGTGATTTTTTGAGTAGGATCAATAGTGACCAGGTGCACAAGGTGGAGGTTGATGGGGTCCACATCATGTTCAAGTTGAAGGCTGGTGTTGGAACAAGCCATGATGATGGTGGTGATGTTGTTGCAGGTAGTAGTAGTAGGTTGCAGGAATCAGAGTCTTTGGTGAAGAGTGTTGCAACAACTAGGAGGATAGTGTATACTACCACAAGGCCTAGTGATATCAGAACACCCTATGAGAAGATGCTGGACAATAAAGTGGAATTTGGGTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGATAGCCTTGTTTTATGCTGCTGTGCTTGCGGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGCATACGGCTGGTCAGATACGGAACCGCAAATCAGGCCCTTCTGCTGGTACAAAGTCATCTGAACAAGGAGAAACAGTCACTTTTGCTGATATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTAGAATTTCTGCAAAATCCAGATAGATACGTAAGGCTTGGTGCTCGCCCACCTCGTGGTGTTCTCTTGGTGGGTCTTCCTGGAACAGGTAAGACTTTACTTGCGAAGGCTGTGGCTGGGGAAGCTGATGTGCCATTTATAAGTTGTTCTGCTAGTGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTGAGATGGATGGGTTTGATAGCAATTCTTCAGTGATTGTTCTTGGAGCTACTAATCGGTCAGATGTCTTGGATCCTGCACTTCGCCGGCCAGGAAGATTTGATCGTGTAGTTATGGTAGAAGCACCTGATAGAATTGGAAGAGAAGCCATCCTAAAAGTTCATGTTTCCAAGAAGGAACTTCCTTTAGCCAAGGATGTTGACCTCAGTGGCATTGCTTGTATGACCACTGGTTTTACTGGAGCAGATCTTGCAAACCTAGTAAATGAGGCTGCTTTACTGGCTGGGAGACAAAATAAAGTTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCTGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGAAACTAAGTATATTGCCAAGGTCAGGAGGGGCTTTGGGCTTTACTTATATTCCTCCAACAACTGAGGATAGATACTTGCTATTTGTCGATGAGTTGCATGGTCGCCTGGTGACCCTTCTTGGAGGACGTGCAGCTGAAGAAGTTGTTTTTTCTGGTCGAGTGTCAACAGGTGCACTTGATGACATACGACGAGCAACTGACATGGCATACAAGGCTATAGCTGAATATGGTCTTAATCAGACCATAGGTCCTGTTTCAATAGCCACTCTTTCTAGTGGTGGAATTGATGAGTCTGGGGGAGCAGTTCCTTGGGGAAGGGATCAGGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTGTAGCACTTTCCATTATCCGAGCCAATCCTACTGTTTTGGAGGGCCTTGGTGCTGATTTGGAAGAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTGTCGCACCAACAGAGCTTGATGCCTTTGTCAAAGGTACACAGCCACCTCTTCTTCCATCGCAGACAGGTTCCTGA
Predicted protein sequences of Glyma.18g065600
>Glyma.18g065600.1.p sequence-type=predicted peptide transcript=Glyma.18g065600.1 locus=Glyma.18g065600 ID=Glyma.18g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLEHHFHYLPPLTHTKLKPFSRANSRVSLPHIETTLRRFNPSSCRFRCPISSNDSLRFGLRGGHRTSWVCRSAGEPDSAADSGEKKTGSDDDADSNRRKGGWWWRWRRWRWQPLIQAQEIGVLLMQIGIAFFVLRLLRPGVSLPGSDPRSPTVFVSVPYSDFLSRINSDQVHKVEVDGVHIMFKLKAGVGTSHDDGGDVVAGSSSRLQESESLVKSVATTRRIVYTTTRPSDIRTPYEKMLDNKVEFGSPDKRSGGFFNSALIALFYAAVLAGLLHRFPVSFSQHTAGQIRNRKSGPSAGTKSSEQGETVTFADIAGVDEAKEELEEIVEFLQNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKREAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSSVIVLGATNRSDVLDPALRRPGRFDRVVMVEAPDRIGREAILKVHVSKKELPLAKDVDLSGIACMTTGFTGADLANLVNEAALLAGRQNKVVVEKLDFIQAVERSIAGIEKKTAKLRGSEKAVVARHEAGHAVVGTAVAKLLPGQPRVEKLSILPRSGGALGFTYIPPTTEDRYLLFVDELHGRLVTLLGGRAAEEVVFSGRVSTGALDDIRRATDMAYKAIAEYGLNQTIGPVSIATLSSGGIDESGGAVPWGRDQGHLVDLVQKEVQTLLQSALAVALSIIRANPTVLEGLGADLEEKEKVEGEELQKWLRLVVAPTELDAFVKGTQPPLLPSQTGS*






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