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Report for Sequence Feature Glyma.18g061500

Feature Type:gene_model
Chromosome:Gm18
Start:5590342
stop:5593044
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g061500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30000.1AT PHF5-like protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0005686GO-cc U2 snRNP EnsemblGenomesN/AIEA
GO:0005689GO-cc U12-type spliceosomal complex EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
KOG1705 KOG Uncharacterized conserved protein, contains CXXC motifs JGI N/AIEA
PTHR13120Panther FAMILY NOT NAMED JGI N/AIEA
PF03660PFAM PHF5-like protein JGI N/AIEA

Expression Patterns of Glyma.18g061500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g061500
ParalogEvidenceComments
Glyma.11g173100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g061500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g06890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g061500
>Glyma.18g061500.2 sequence-type=transcript locus=Glyma.18g061500 ID=Glyma.18g061500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTCTGGATTGTTCAGTGAAGTTCCATTTCCTTCTCCGCTCCATTCTTCTCCCTCCCTTGCTTCTTTCTCTTTCGCTTCCACCGTAACACAACCCTCGTTGTTCCGTGTTCTGGCGAAGCGACACCGTTTTACACTTCCTCTTCTCGGCACAGAATCTAGCAGGTTGTTGAAAATATGGCCAAGCATCATCCTGATTTGATTATGTGCCGGAAGCAGCCAGGGATTGCCATTGGACGACTGTGCGAGAAATGTGATGGCAAGTGTGTGATATGTGACTCTTATGTGCGTCCTTGTACACTTGTCCGAGTTTGTGATGAATGCAACTACGGATCATTTCAGGGTCGATGTGTCATATGCGGAGGAGTTGGAATATCTGATGCCTACTACTGCAAGGAATGCACACAGCAGGAGAAAGATAGAGATGGTTGCCCCAAAATTGTTAACTTAGGGAGTGCCAAGACTGATTTATTTTATGAACGCAAAAAGTATGGTTTTAAGAAGAGATGATGAAGGTAGAATACTGAGGCATTTGTATTTCTCTAAAACTTTTTTGTACGTGTATTGTTTGGATATAAGAACCATAGGATGTGAAACCTTGAGCTCGTAAACTTTTTTATGGTACAATTATGATATAAATGCTTGACTAGTTTGCTACTGATCAAAGAATTAGCCAATAGC
Coding sequences of Glyma.18g061500
>Glyma.18g061500.1 sequence-type=CDS polypeptide=Glyma.18g061500.1.p locus=Glyma.18g061500 ID=Glyma.18g061500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGCATCATCCTGATTTGATTATGTGCCGGAAGCAGCCAGGGATTGCCATTGGACGACTGTGCGAGAAATGTGATGGCAAGTGTGTGATATGTGACTCTTATGTGCGTCCTTGTACACTTGTCCGAGTTTGTGATGAATGCAACTACGGATCATTTCAGGGTCGATGTGTCATATGCGGAGGAGTTGGAATATCTGATGCCTACTACTGCAAGGAATGCACACAGCAGGAGAAAGATAGAGATGGTTGCCCCAAAATTGTTAACTTAGGGAGTGCCAAGACTGATTTATTTTATGAACGCAAAAAGTATGGTTTTAAGAAGAGATGA

>Glyma.18g061500.2 sequence-type=CDS polypeptide=Glyma.18g061500.2.p locus=Glyma.18g061500 ID=Glyma.18g061500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGCATCATCCTGATTTGATTATGTGCCGGAAGCAGCCAGGGATTGCCATTGGACGACTGTGCGAGAAATGTGATGGCAAGTGTGTGATATGTGACTCTTATGTGCGTCCTTGTACACTTGTCCGAGTTTGTGATGAATGCAACTACGGATCATTTCAGGGTCGATGTGTCATATGCGGAGGAGTTGGAATATCTGATGCCTACTACTGCAAGGAATGCACACAGCAGGAGAAAGATAGAGATGGTTGCCCCAAAATTGTTAACTTAGGGAGTGCCAAGACTGATTTATTTTATGAACGCAAAAAGTATGGTTTTAAGAAGAGATGA
Predicted protein sequences of Glyma.18g061500
>Glyma.18g061500.1.p sequence-type=predicted peptide transcript=Glyma.18g061500.1 locus=Glyma.18g061500 ID=Glyma.18g061500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*

>Glyma.18g061500.2.p sequence-type=predicted peptide transcript=Glyma.18g061500.2 locus=Glyma.18g061500 ID=Glyma.18g061500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*






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