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Report for Sequence Feature Glyma.18g055400

Feature Type:gene_model
Chromosome:Gm18
Start:4824726
stop:4828902
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g055400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05340.1AT Peroxidase superfamily protein JGI N/AIEA
GO:0006979GO-bp response to oxidative stress EnsemblGenomesN/AIEA
GO:0006979GO-bp response to oxidative stress JGI N/AIEA
GO:0042744GO-bp hydrogen peroxide catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00141PFAM Peroxidase JGI N/AIEA
GN7V-48541SoyCyc9-rxn peroxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g055400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g055400
ParalogEvidenceComments
Glyma.11g161800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g055400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g06220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g055400
>Glyma.18g055400.1 sequence-type=CDS polypeptide=Glyma.18g055400.1.p locus=Glyma.18g055400 ID=Glyma.18g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTAATATTCAAACTCTGCTTGTGCTTGTTCTGGCAACATTGGGAACATTTATGATCCCTTCCAATGCACAGCTTACTCCTAATTTCTATAAGAAAGTTTGTCCCCAGGCATTGCCAATCATAAGGTCTGTCGTTCACCGAGCAATTATTCGTGAACGACGCATTGGAGCCTCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGTTGTGATGGATCAGTTCTACTGGATGACACGCACAACTTCACTGGCGAGAAAACAGCCCTACCTAATCTGAATTCAATAAGAGGTTTGGAAGTGGTTGATGAGATTAAGGCAGCGGTTGACAAAGCTTGCAACCGTCCTGCTGTATCATGTGCAGATATCTTAGCTATAGCTGCTCGTGATTCTGTGGCCATATTAGGGGGTCCACACCTATGGTACGGCGTGTTACTAGGCAGAAGAGACGCGAGAACAGCAAGCAAGGATGCTGCAAACGCCAATCTCCCTCCTCCATTTTTCAACTTCTCACAGCTTCTCTCCAACTTCAACTCTCACGGATTAGACCTCAAAGATCTTGTGGCACTCTCTGGTGGCCACACCATAGGGTTTGCAAGGTGCACTACCTTCAGGGACCGCATCTACAACGACACCATGGCCAACATAAACCCTACTTTTGCAGCCTCTTTGAGGAAAACATGCCCTAGAGTTGGCGGTGACAACAACTTGGCACCGTTGGATCCAACTCCTGCAACGGTTGACACTTCATACTTCAAGGAATTGCTGTGCAAAAAGGGTCTCCTTCATTCGGATCAAGAACTCTACAAGGGAAATGGCAGTGAAAGTGACAAGTTGGTGGAGCTTTATAGCAGGAACCCTTTTGCATTTGCTAGAGATTTCAAGGCTTCTATGATCAAGATGGGTAACATGAAGCCTCTCACAGGGAACAAAGGAGAGATCAGACGCAACTGCAGAAGAGTTAATTAA
Predicted protein sequences of Glyma.18g055400
>Glyma.18g055400.1.p sequence-type=predicted peptide transcript=Glyma.18g055400.1 locus=Glyma.18g055400 ID=Glyma.18g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASNIQTLLVLVLATLGTFMIPSNAQLTPNFYKKVCPQALPIIRSVVHRAIIRERRIGASLLRLHFHDCFVNGCDGSVLLDDTHNFTGEKTALPNLNSIRGLEVVDEIKAAVDKACNRPAVSCADILAIAARDSVAILGGPHLWYGVLLGRRDARTASKDAANANLPPPFFNFSQLLSNFNSHGLDLKDLVALSGGHTIGFARCTTFRDRIYNDTMANINPTFAASLRKTCPRVGGDNNLAPLDPTPATVDTSYFKELLCKKGLLHSDQELYKGNGSESDKLVELYSRNPFAFARDFKASMIKMGNMKPLTGNKGEIRRNCRRVN*






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