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Report for Sequence Feature Glyma.18g051900

Feature Type:gene_model
Chromosome:Gm18
Start:4476252
stop:4476551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g051900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78340.1AT glutathione S-transferase TAU 22 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI N/AIEA
PTHR11260:SF54Panther JGI N/AIEA
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI N/AIEA
GN7V-46835SoyCyc9-rxn glutathione transferase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g051900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g051900 not represented in the dataset
Glyma.18g051900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g051900
ParalogEvidenceComments
Glyma.11g198500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.18g051900
>Glyma.18g051900.1 sequence-type=CDS polypeptide=Glyma.18g051900.1.p locus=Glyma.18g051900 ID=Glyma.18g051900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAAGCCAATGTAGTGCCGTTGGATTTCTGGCCAAGCTCTTATGGAATGAGAGTGAAAATCGCTTTGGCAGAGAAGGGTATCTCATATGAGTGCAAACAAGAAGACTTGGAAGCTAAAAGTTCTCTGATTTTAGAGATGAACCCGGTTCACAAAATGATACCAGTTTTGATTCATAATGGAAAATCCATTTGTGAATCACTTAACATTGTTCAGTACATTGATGAGGCATGGAACCTCAAACCTTCTCTACTTCCATCTGACCTTTACAAACGATCCCAAGCCAGGTTTTGTTGA
Predicted protein sequences of Glyma.18g051900
>Glyma.18g051900.1.p sequence-type=predicted peptide transcript=Glyma.18g051900.1 locus=Glyma.18g051900 ID=Glyma.18g051900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEANVVPLDFWPSSYGMRVKIALAEKGISYECKQEDLEAKSSLILEMNPVHKMIPVLIHNGKSICESLNIVQYIDEAWNLKPSLLPSDLYKRSQARFC*






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