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Report for Sequence Feature Glyma.18g048900

Feature Type:gene_model
Chromosome:Gm18
Start:4173085
stop:4190655
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.18g048900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27680.1AT RECQSIM JGI N/AIEA
3.6.4.12EC DNA helicase JGI N/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0005622GO-cc intracellular anatomical structure JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
K03654KEGG DNA repair and recombination proteins JGI N/AIEA
KOG0327 KOG Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases JGI N/AIEA
KOG0335 KOG ATP-dependent RNA helicase JGI N/AIEA
KOG0340 KOG ATP-dependent RNA helicase JGI N/AIEA
PTHR13710PantherFam DNA HELICASE RECQ FAMILY MEMBER JGI N/AIEA
PF00270Pfam DEAD/DEAH box helicase JGI N/AIEA
PF00271Pfam Helicase conserved C-terminal domain JGI N/AIEA
PF00570Pfam HRDC domain JGI N/AIEA
PF09382Pfam RQC domain JGI N/AIEA
PF14493Pfam Helix-turn-helix domain JGI N/AIEA
PF16124Pfam RecQ zinc-binding JGI N/AIEA

Gene model name correspondences to Glyma.18g048900 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g05562 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g048900
>Glyma.18g048900.1 sequence-type=CDS polypeptide=Glyma.18g048900.1.p locus=Glyma.18g048900 id=Glyma.18g048900.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCCGTGGAGACCATGTGCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGCAAGTCCTTGTGTTATCAGGTACCTCCTTTGGTTGCTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAGCACGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTTGAATACAAGCATTTAGACAAGCTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATATGACATCATCAGTTCCCTGAAGCTGAATAATCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGAGGACAATCTTTCATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCGGGCATTGAGGCAGGGATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTATACTACACAAGAAGTGACTTTGCCAAGGGTGACTTTTATTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCAAGGGAAGCATTCCTTCTAATGGCTTGCATTCATTCATGCAGGGGCATATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTAGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGACAGATACAGAACTATTAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCGTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGCATTCAAAACTTTATCCACTTCAGAATCAGAAGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAATATTGATGGTGTGAATCAGCACCTAGTAACAGAATATGGAGATGATTTTCTTCAAGTTATTCAGAAACTGTCACAAGTATTAAACCTATCATTGGATGGGGAAGCAAGAGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAAAGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAAGTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGATTTAGCGAGATGATAGGACTGACACAAGGGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAGATAAGTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTAACCAGACTGGGAAAGATGACGAACCTGCACACAATGCTTCAAATTTGTCAGATCCTACTTTAGAAACATGCCACGTGGAAAGATATTGTGAAGACGGCATCTCTGCCAAAAGTTCTCTGGAAAAATGGGACCTAGAAATTGATGAGGTGCCTATTCTACCTGTCAATGGTTCGGAGGTACAGAAGCTTCCATTAGTCTGTGAGGGGGAATTCACAAACAAACGACAAAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAACACTTCAATGGATCCAGTAAAGATTCCGTGGTTGAACTGCTAAATTGCCTTCAGTCTGACTTTTCAATATATAGTAAAGGTGGCACGTATAAGATTCTGTAA

>Glyma.18g048900.2 sequence-type=CDS polypeptide=Glyma.18g048900.2.p locus=Glyma.18g048900 id=Glyma.18g048900.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCCGTGGAGACCATGTGCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGCAAGTCCTTGTGTTATCAGGTACCTCCTTTGGTTGCTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAGCACGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTTGAATACAAGCATTTAGACAAGCTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATATGACATCATCAGTTCCCTGAAGCTGAATAATCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGAGGACAATCTTTCATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCGGGCATTGAGGCAGGGATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTATACTACACAAGAAGTGACTTTGCCAAGGGTGACTTTTATTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCAAGGGAAGCATTCCTTCTAATGGCTTGCATTCATTCATGCAGGGGCATATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTAGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGACAGATACAGAACTATTAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCGTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGCATTCAAAACTTTATCCACTTCAGAATCAGAAGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAATATTGATGGTGTGAATCAGCACCTAGTAACAGAATATGGAGATGATTTTCTTCAAGTTATTCAGAAACTGTCACAAGTATTAAACCTATCATTGGATGGGGAAGCAAGAGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAAAGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAAGTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGATTTAGCGAGATGATAGGACTGACACAAGGGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAGGTGAGTTCGAATTTCCTACCTTCATGA
Predicted protein sequences of Glyma.18g048900
>Glyma.18g048900.1.p sequence-type=predicted peptide transcript=Glyma.18g048900.1 locus=Glyma.18g048900 id=Glyma.18g048900.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSVETMCSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDIISSLKLNNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGIWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALRHQLISQGYLKEIVSDRYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQEAFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTEYGDDFLQVIQKLSQVLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKKWHEDGCSIHEIANFPGRSAPIKEQSVAEYLLEAAQEGLPFDWARFSEMIGLTQGIISEIQGAISKVGSTDKLKPIKNELPEEISYQHIKTYLTMRNCGISLEAIQSGSNQTGKDDEPAHNASNLSDPTLETCHVERYCEDGISAKSSLEKWDLEIDEVPILPVNGSEVQKLPLVCEGEFTNKRQKVSETKEVNSTKLKATESSVVEWLKNLDEGATLSDVLEHFNGSSKDSVVELLNCLQSDFSIYSKGGTYKIL*

>Glyma.18g048900.2.p sequence-type=predicted peptide transcript=Glyma.18g048900.2 locus=Glyma.18g048900 id=Glyma.18g048900.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSVETMCSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDIISSLKLNNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGIWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALRHQLISQGYLKEIVSDRYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQEAFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTEYGDDFLQVIQKLSQVLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKKWHEDGCSIHEIANFPGRSAPIKEQSVAEYLLEAAQEGLPFDWARFSEMIGLTQGIISEIQGAISKVGSTDKLKPIKNELPEEVSSNFLPS*






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