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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02010.1 | AT | glutamate decarboxylase 4 | JGI | N/A | IEA |
| GO:0006536 | GO-bp | glutamate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0019752 | GO-bp | carboxylic acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019752 | GO-bp | carboxylic acid metabolic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004351 | GO-mf | glutamate decarboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016831 | GO-mf | carboxy-lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016831 | GO-mf | carboxy-lyase activity | JGI | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | JGI | N/A | IEA |
| KOG1383 | KOG | Glutamate decarboxylase/sphingosine phosphate lyase | JGI | N/A | IEA |
| PTHR11999 | Panther | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | JGI | N/A | IEA |
| PTHR11999:SF1 | Panther | GLUTAMATE DECARBOXYLASE | JGI | N/A | IEA |
| PF00282 | PFAM | Pyridoxal-dependent decarboxylase conserved domain | JGI | N/A | IEA |
| PWY-4321 | SoyCyc9 | L-glutamate degradation IV | Plant Metabolic Network | ISS | |
| GN7V-63409 | SoyCyc9-rxn | glutamate decarboxylase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| GAD | GAD protein |
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Glyma.18g043600 not represented in the dataset |
Glyma.18g043600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g213000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g04940 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g043600.1 sequence-type=CDS polypeptide=Glyma.18g043600.1.p locus=Glyma.18g043600 ID=Glyma.18g043600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTCTCTCCAAAACCGCCTCCGAATCCGACGTCTCTGTCCACTCAACCTTCGCTTCTCGCTATGTCAGAACTTCGCTTCCCAGGTTCAAGATGGCGGAGGAGTCGATACCGAAGGAGGCAGCATACCAGATCATAAACGACGAGTTGATGTTGGATGGGAACCCAAGGTTGAATTTGGCATCATTTGTGACGACTTGGATGGAGCCAGAGTGTGATAAACTCATCATGGCTGCCATTAATAAGAACTATGTTGACATGGACGAGTACCCTGTCACCACTGAGCTACAGAATCGATGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTAGAAGAGACTGAGGCAGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATTATGTTGGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTGAAGCTCCGTGATGATTATTATGTAATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAATGATCTCCTAATTGAAAAGAACAAAATAACTGGGTGGGACACTCCTATTCATGTTGATGCAGCCAGCGGTGGGTTCATAGCCCCATTTATTTACCCAGAGCTTGAGTGGGACTTCCGGTTACAACTAGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTTTGGTCTATGCTGGAATCGGTTGGGTTATCTGGAGAAGCAAGCAGGACTTGCCTGAGGAACTCATCTTTCACATCAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTGAGGGATATAGAAACGTGATGGAAAACTGCAGGGACAACATGCTGGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGATTTTCAATTGTGTCCAAAGACAATGGTGTGCCTTTGGTGGCTTTCACACTGAAAGACCACACCCACTTTGACGAATTCCAAATCTCAGACTTTTTAAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACAGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGGACCCTCGCGGAGCGTCTCGTGTCCGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCTGCAAGGGTCATCAGCAGCACCACTGTGACACTCAGTGCAGAAGAAAATGGCAAGGTAGTGGTTGCTAAGAAGAATCCTATGGAGACTCAGAGGGAAATCACTGCCATTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGAACAATGACAAGATGAATGGTGTTTGTTAG
>Glyma.18g043600.1.p sequence-type=predicted peptide transcript=Glyma.18g043600.1 locus=Glyma.18g043600 ID=Glyma.18g043600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMAEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEETEAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKQEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDDYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKITGWDTPIHVDAASGGFIAPFIYPELEWDFRLQLVKSINVSGHKYGLVYAGIGWVIWRSKQDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFSIVSKDNGVPLVAFTLKDHTHFDEFQISDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVSDVEKVLHELDSLPARVISSTTVTLSAEENGKVVVAKKNPMETQREITAIWKKFVLERKKNNDKMNGVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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