Glyma.18g042100

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Report for Sequence Feature Glyma.18g042100

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3553145
stop:	3554976
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g042100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37490.1	AT	ARM repeat superfamily protein	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	JGI	N/A	IEA
GO:0000151	GO-cc	ubiquitin ligase complex	JGI	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein transferase activity	EnsemblGenomes	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein ligase activity	JGI	N/A	IEA
GO:0005488	GO-mf	binding	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
PTHR22849	Panther	WDSAM1 PROTEIN	JGI	N/A	IEA
PF04564	PFAM	U-box domain	JGI	N/A	IEA

Proteins Associated with Glyma.18g042100

Locus	Gene Symbol	Protein Name
	13-1-1	syringolide-induced protein 13-1-1

Expression Patterns of Glyma.18g042100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g042100

Paralog	Evidence	Comments
Glyma.11g214500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g042100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g04770	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g042100

Limit To All Plant Sequences

>Glyma.18g042100.1 sequence-type=CDS polypeptide=Glyma.18g042100.1.p locus=Glyma.18g042100 ID=Glyma.18g042100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTTGTCTTGGTCAAGAAGGAACGTTTTCCGCCGTGCCAAGAAGGAGAAGTCACAAACTCAATTGGAAGTGGAGGTTGTGATTCCCAACCACTTTCACTGCCCGGTGAGTCTGGAGCTGATGACAGACCCAGTGACTTTATCAACCGGCATCACCTACGACCGTGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACATCATCCCCAACCACGCCATTCGCAGGATGATTCAGGATTGGTGTGTCGAAAATAGTTCTTATGGGATTGATAGAATCCCCACACCTCGTATTCCTATCTCGGCATACGAGGTTTCCGACACGTGTACCAGGATCTTGTCGGCTTGCCAGCGTGGAGATGACAAGAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGAGTAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGAAAAACATGTGGTGCTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGGTCCCACTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAGGAGCTTCTTTGAATTCGTTGGTATGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTTCAAGAATTGGCCAAGGTTGGAGAAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGCACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCGTTGGCTGCGAATAGAGAGGGAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCGAGAAGGGGAAGGAGGTTGTGAAGAGCAATGCTCTAGCCTTGCCTCTTGTTGTTAGGAAGCTTTTGAGGGTGTCACCATTGGCTTCAGGTTTTGCTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGATTCTGATTGAGGCACTTCAAGTTGGGCTTTTTCAGAAGCTCTTGGTTCTGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCGGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATTGAATTTCGAGCATCTTAAGAAGCCATTTTAA

Predicted protein sequences of Glyma.18g042100

Limit To All Plant Sequences

>Glyma.18g042100.1.p sequence-type=predicted peptide transcript=Glyma.18g042100.1 locus=Glyma.18g042100 ID=Glyma.18g042100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLSWSRRNVFRRAKKEKSQTQLEVEVVIPNHFHCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNRTCPVTNQVLTTFDIIPNHAIRRMIQDWCVENSSYGIDRIPTPRIPISAYEVSDTCTRILSACQRGDDKRCQELVGKIKVWSRESERNKRCIVGAGAGAVLAYAFDCFSSNSIEKHVVLLEEVLEVMTWMVPLGEEGVSKLSSGASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGEVVEALVKMVREPIGSTSTKACLATIFNLVSLAANREGIAQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCEKGKEVVKSNALALPLVVRKLLRVSPLASGFAVSILRKICDKREEGILIEALQVGLFQKLLVLLQVGCDESTKENATGLLKLLNGYRNKAECTDSSLNFEHLKKPF*

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