Glyma.18g040000

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Report for Sequence Feature Glyma.18g040000

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3278869
stop:	3281985
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g040000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03450.1	AT	RGA-like 2	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0009723	GO-bp	response to ethylene	EnsemblGenomes	N/A	IEA
GO:0009737	GO-bp	response to abscisic acid	EnsemblGenomes	N/A	IEA
GO:0009863	GO-bp	salicylic acid mediated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0009867	GO-bp	jasmonic acid mediated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0009938	GO-bp	negative regulation of gibberellic acid mediated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0010187	GO-bp	negative regulation of seed germination	EnsemblGenomes	N/A	IEA
GO:0042538	GO-bp	hyperosmotic salinity response	EnsemblGenomes	N/A	IEA
GO:2000033	GO-bp	regulation of seed dormancy process	EnsemblGenomes	N/A	IEA
GO:2000377	GO-bp	regulation of reactive oxygen species metabolic process	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0000989	GO-mf	transcription factor activity, transcription factor binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003712	GO-mf	transcription cofactor activity	EnsemblGenomes	N/A	IEA
GO:0043565	GO-mf	sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
PF03514	PFAM	GRAS domain family	JGI	N/A	IEA
PF12041	PFAM	Transcriptional regulator DELLA protein N terminal	JGI	N/A	IEA

Expression Patterns of Glyma.18g040000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g040000

Paralog	Evidence	Comments
Glyma.11g216500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g040000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g04500	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g040000

Limit To All Plant Sequences

>Glyma.18g040000.1 sequence-type=CDS polypeptide=Glyma.18g040000.1.p locus=Glyma.18g040000 ID=Glyma.18g040000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAGGGATCACCGAGATAGCTGCGGCGGCGGCGGCGGAGGGAGTGTGAAGGGTGAGTGTTCCTCAATGCCGTCGAACGGGAAGGCAAATATGTGGGAGGAACAACAACAACAACAACAGGGGATGGACGAGTTGCTGGCGGCGTTGGGGTACAAGGTTCGTGCTTCCGACATGGCCGACGTGGCACAGAAGCTGGAGCAGTTGGAGATGGTCATGGGTTGTGCCCAGGAAGAGGGAATTTCCCACCTCGCCTCCGACACCGTCCACTACGATCCCACGGATCTTTATTCCTGGGTCCAAACCATGTTAACCGAACTCAACCCTGAACCCAACAACAACAACAATAGCCTCCTCGGTCCATCTTCTCTCTTAATCGACAACAACACCGCCCCTGTTTTCAACGACGATTCCGAATATGACCTCAGAGCCATTCCTGGTATTGCAGCCTACCCTCCTCCTCCTCCACAAGACAACAACAACAACAACAACAACCTCGACGAAATCGAAACAGCTAACAACATCAACAAGCGTCTCAAGCCATCTCCAGTTGAATCAGCAGACTCCGCGTCTGAGCCCACGCGCACGGTGCTGCTCGTTGACCATCAGGAAGCCGGCGTGCGTCTGGTCCACACTCTCCTGGCGTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCCGACGCGCTCGTCAAGCACGTGGGCATACTCGCGGCTTCTCAAGCCGGCGCCATGAGGAAGGTGGCTTCCTACTTCGCCCAAGCCCTCGCGCGTCGTATCTACGGAATCTTCCCGGAAGAAACCCTCGACTCCTCCTTCTCCGACGTTCTCCACATGCACTTCTACGAGTCCTGCCCTTACCTCAAATTCGCGCACTTCACCGCGAATCAGGCTATCCTCGAAGCATTTGCCACTGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAGACAAGGGATGCAGTGGCCTGCACTCATGCAAGCCCTTGCATTGCGGCCCGGCGGGCCCCCGACTTTCCGTCTAACCGGAATCGGCCCGCCGCAGCCCGACAACACCGACGCGCTGCAGCAAGTGGGCTGGAAATTAGCCCAATTGGCCCAGAACATCGGCGTCCAGTTCGAATTCCGCGGCTTCGTTTGCAACAGCCTCGCGGATCTCGACCCGAAAATGCTCGAGATCCGACCCGGAGAAGCCGTCGCTGTCAACTCGGTTTTCGAGCTCCATCGTATGCTGGCCCGCCCCGGATCCGTCGACAAGGTCTTGGACACTGTTAAGAAAATCAAGCCGAAGATTGTCACCATCGTGGAACAAGAAGCGAACCACAACGGACCGGGTTTTCTTGACCGGTTCACTGAGGCCTTGCATTACTACTCCAGCCTATTCGACTCGCTGGAGGGTTCGTCCTCTTCGACCGGGTTGGGCTCACCAAATCAGGATCTGTTAATGTCCGAGTTGTACCTGGGGAGACAAATATGCAACGTGGTGGCTAACGAGGGCGCGGACCGGGTAGAGCGTCACGAGACTTTGAGTCAGTGGAGGGGGAGATTGGACTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCCAACGCGTTCAAGCAAGCGAGTATGCTACTTGCTCTATTCGCAGGCGGTGACGGCTATAGGGTTGAGGAGAATAACGGCTGCCTCATGCTTGGCTGGCACACTCGGCCACTCATCGCTACCTCCGCCTGGAAGCTTCCCTCCCCGAACGACTTGCACTGTAAACTGTAG

Predicted protein sequences of Glyma.18g040000

Limit To All Plant Sequences

>Glyma.18g040000.1.p sequence-type=predicted peptide transcript=Glyma.18g040000.1 locus=Glyma.18g040000 ID=Glyma.18g040000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRDHRDSCGGGGGGSVKGECSSMPSNGKANMWEEQQQQQQGMDELLAALGYKVRASDMADVAQKLEQLEMVMGCAQEEGISHLASDTVHYDPTDLYSWVQTMLTELNPEPNNNNNSLLGPSSLLIDNNTAPVFNDDSEYDLRAIPGIAAYPPPPPQDNNNNNNNLDEIETANNINKRLKPSPVESADSASEPTRTVLLVDHQEAGVRLVHTLLACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLRQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQNIGVQFEFRGFVCNSLADLDPKMLEIRPGEAVAVNSVFELHRMLARPGSVDKVLDTVKKIKPKIVTIVEQEANHNGPGFLDRFTEALHYYSSLFDSLEGSSSSTGLGSPNQDLLMSELYLGRQICNVVANEGADRVERHETLSQWRGRLDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPSPNDLHCKL*

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