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Report for Sequence Feature Glyma.18g038600

Feature Type:gene_model
Chromosome:Gm18
Start:3109693
stop:3117757
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g038600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G37850.1AT pfkB-like carbohydrate kinase family protein JGI N/AIEA
AT5G37850.2AT pfkB-like carbohydrate kinase family protein JGI N/AIEA
GO:0009443GO-bp pyridoxal 5'-phosphate salvage EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0008478GO-mf pyridoxal kinase activity EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
KOG2599 KOG Pyridoxal/pyridoxine/pyridoxamine kinase JGI N/AIEA
PTHR10534Panther PYRIDOXAL KINASE JGI N/AIEA
PF08543PFAM Phosphomethylpyrimidine kinase JGI N/AIEA
PLPSAL-PWYSoyCyc9 pyridoxal 5'-phosphate salvage I Plant Metabolic Network ISS
PWY-7204SoyCyc9 pyridoxal 5'-phosphate salvage II (plants) Plant Metabolic Network ISS
GN7V-57000SoyCyc9-rxn pyridoxal kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g038600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g038600 not represented in the dataset
Glyma.18g038600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g038600
ParalogEvidenceComments
Glyma.11g218700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g038600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g04360 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g038600
>Glyma.18g038600.2 sequence-type=transcript locus=Glyma.18g038600 ID=Glyma.18g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTATATCTCAGTTACATGACAAAAAAATTCGAATCTCTTATTCCTTCCCGTGTGGTGGCAGTTTGGTAATAATACAAATTATTAACATATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTAAAACTTAAAGCTGAAATATACAGCTAAGTTGGTGATACGATTTGAACATGTATGTATTTGCCTGTATTAAATTTTTTTGAAAGGACATCAGCAGTTACAAGAAATTAAGAAGAAAGTTGCTTCATTTGTTTCCTATTTATTGATCAAATATAGAAATTGGAAAGTTATTAAAAACTAACTTTATTATTTACCAATATGACCCAATTATGTTGGGTTTGGTAAAGGTTGAAATAAAGAATAGCTAGTTGAATTTATTATTCCCTTCTTTACTGTCTTCACAATTTCATATCTAATGATTACATCCCAACTTTGGTTGATATTGAGAAAGTAAAAGAAATGTATTATACAAATATCTTTGCACTGACATGGAAACATGAGATTGAATTGCTAATTTTGCTACATGTTTTTCACTAGGTTGAGTTGTCAATTGAGTCTAACTAATAAGGATTCTTAAACTCTTGCACTGAGTTTGGACTGTATATTTAATGAGCT

>Glyma.18g038600.3 sequence-type=transcript locus=Glyma.18g038600 ID=Glyma.18g038600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTATATCTCAGTTACATGACAAAAAAATTCGAATCTCTTATTCCTTCCCGTGTGGTGGCAGTTTGGTAATAATACAAATTATTAACATATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTAAAACTTAAAGCTGAAATATACAGCTAAGTTGGTGATACGATTTGAACATGTATGTATTTGCCTGTATTAAATTTTTTTGAAAGGACATCAGCAGTTACAAGAAATTAAGAAGAAAGTTGCTTCATTTGTTTCCTATTTATTGATCAAATATAGAAATTGGAAAGTTATTAAAAACTAACTTTATTATTTACCAATATGACCCAATTATGTTGGGTTTGGTAAAGGTTGAAATAAAGAATAGCTAGTTGAATTTATT

>Glyma.18g038600.4 sequence-type=transcript locus=Glyma.18g038600 ID=Glyma.18g038600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCCACAAACGAGCATTTTCCGGTAAATCAATTAATCACTCTCTTCCGATTCTCAATTTTCTCAGCCTCGCTgtattggctttcggttcccatttcgttttctttttcttctctttttTCTCCCAATTTTCAAGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTAAAACTTAAAGCTGAAATATACAGCTAAGTTGGTGATACGATTTGAACATGTATGTATTTGCCTGTATTAAATTTTTTTGAAAGGACATCAGCAGTTACAAGAAATTAAGAAGAAAGTTGCTTCATTTGTTTCCTATTTATTGATCAAATATAGAAATTGGAAAGTTATTAAAAACTAACTTTATTATTTACCAATATGACCCAATTATGTTGGGTTTGGTAAAGGTTGAAATAAAGAATAGCTAGTTGAATTTATT
Coding sequences of Glyma.18g038600
>Glyma.18g038600.1 sequence-type=CDS polypeptide=Glyma.18g038600.1.p locus=Glyma.18g038600 ID=Glyma.18g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTCCATGATATGGGAAGAAAACTGCATCATATTTGA

>Glyma.18g038600.2 sequence-type=CDS polypeptide=Glyma.18g038600.2.p locus=Glyma.18g038600 ID=Glyma.18g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCCAGACAATTTAAGATTGTTATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCGGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTCAGTGACTACAAAAGTGCTGGACATGATCCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTTGCACCCCACAGGTAAAACTTAAAGCTGAAATATACAGCTAA

>Glyma.18g038600.3 sequence-type=CDS polypeptide=Glyma.18g038600.3.p locus=Glyma.18g038600 ID=Glyma.18g038600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAGTGTCATCGTCATCGGAATGAATGTAGACGCAGCAGGAGTTGGCTGGCTCAACGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGCTCTCACTCAACTTCAGATTTTCCCCACAAACGAGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGTCATAA

>Glyma.18g038600.4 sequence-type=CDS polypeptide=Glyma.18g038600.4.p locus=Glyma.18g038600 ID=Glyma.18g038600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCTCCAATCCTCTCGCTCGCTCTTCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATCGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGCTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAGCAAACTTCGGTCAACAAACCCAGGTCTTTCGTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTTCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGTCATAA
Predicted protein sequences of Glyma.18g038600
>Glyma.18g038600.1.p sequence-type=predicted peptide transcript=Glyma.18g038600.1 locus=Glyma.18g038600 ID=Glyma.18g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSVIVIGMNVDAAGVGWLNVEHCSMLLKPPLSLNFRFSPQTSIFRARNSRNSRMAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVSKLRSTNPGLSYVCDPVMGDEGKLYVPQELVSVYREKVVPVASMLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKVIITSINIDGILLLIGSHQKEKGEPPRQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDPESTSLEIRLIQSQDDICTPQVHDMGRKLHHI*

>Glyma.18g038600.2.p sequence-type=predicted peptide transcript=Glyma.18g038600.2 locus=Glyma.18g038600 ID=Glyma.18g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSVIVIGMNVDAAGVGWLNVEHCSMLLKPPLSLNFRFSPQTSIFRARNSRNSRMAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVSKLRSTNPGLSYVCDPVMGDEGKLYVPQELVSVYREKVVPVASMLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKVIITSINIDGILLLIGSHQKEKGEPPRQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDPESTSLEIRLIQSQDDICTPQVKLKAEIYS*

>Glyma.18g038600.3.p sequence-type=predicted peptide transcript=Glyma.18g038600.3 locus=Glyma.18g038600 ID=Glyma.18g038600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKSVIVIGMNVDAAGVGWLNVEHCSMLLKPPLSLNFRFSPQTSIFRARNSRNSRMAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVSKLRSTNPGLSYVCDPVMGDEGKLYVPQELVSVYREKVVPVASMLTPNQFEAELLTGFRS*

>Glyma.18g038600.4.p sequence-type=predicted peptide transcript=Glyma.18g038600.4 locus=Glyma.18g038600 ID=Glyma.18g038600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVSKLRSTNPGLSYVCDPVMGDEGKLYVPQELVSVYREKVVPVASMLTPNQFEAELLTGFRS*






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