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Report for Sequence Feature Glyma.18g029100

Feature Type:gene_model
Chromosome:Gm18
Start:2205849
stop:2208464
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g029100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09200.2AT Ribosomal protein L10 family protein JGI N/AIEA
GO:0006414GO-bp translational elongation JGI N/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG0815 KOG 60S acidic ribosomal protein P0 JGI N/AIEA
PTHR21141Panther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER JGI N/AIEA
PTHR21141:SF3Panther 60S ACIDIC RIBOSOMAL PROTEIN P0 JGI N/AIEA
PF00428PFAM 60s Acidic ribosomal protein JGI N/AIEA
PF00466PFAM Ribosomal protein L10 JGI N/AIEA

Expression Patterns of Glyma.18g029100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g029100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g03290 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g029100
>Glyma.18g029100.1 sequence-type=CDS polypeptide=Glyma.18g029100.1.p locus=Glyma.18g029100 ID=Glyma.18g029100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTGATACCCACGAAAGCGGAGAAGAAGGTGTCGTACGATGTGAAGCTGTGCCAACTTCTAGAGGATTACACCCAAATTCTGGTAGTGGCTGCGGACAACGTTGGATCAAACCAACTTGAGAACATTCGAAAGGATCTACGTGGCGACTCGGTGTGTAATTTGAAGGAGGTTAGCGAAGAGGTTGCCAGGTACAAGTTGGTAGCTCCTGCTCGTGTAGGGTTGGTTGCACCTATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTGGATCCCTCTCAAACCTCTTTCTTTCAGATTAATAAGGGTACTGTGGAAATCATCACCCCTGTAGAACTCATTAAGAAGGGAGACAAGGTTGGCTCTTCTGAAGCTGTGTTGCTTTCCAAGCTTGCGATAAGGCCCTTCTCTTATGGGCTTGTTGTCGTTTCTGTTTATGACAATGGTTCATTTTTTAGCCCTGAGGTTCTTGATCTCACTGAAGATGACCTCATTGACAAGTTTTCTGTTGCTGCACCACACATGTTTGGCAATGCTTATAAGAACGTCCTTGCTGTTGCAGTGGCAACAGAATATTCATTCCCAGAAGCAGACAAGGTTAAGGAGTACTTGAAGGTATTCACTGCTCCAGCTACTGCCTCCAAGGAGGAGGAAAAGAAGGAAGAACCAGCAGAAGAATCTGACGATGACATGGGTTTCAGTTTGTTTGATTAA
Predicted protein sequences of Glyma.18g029100
>Glyma.18g029100.1.p sequence-type=predicted peptide transcript=Glyma.18g029100.1 locus=Glyma.18g029100 ID=Glyma.18g029100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVIPTKAEKKVSYDVKLCQLLEDYTQILVVAADNVGSNQLENIRKDLRGDSVCNLKEVSEEVARYKLVAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQINKGTVEIITPVELIKKGDKVGSSEAVLLSKLAIRPFSYGLVVVSVYDNGSFFSPEVLDLTEDDLIDKFSVAAPHMFGNAYKNVLAVAVATEYSFPEADKVKEYLKVFTAPATASKEEEKKEEPAEESDDDMGFSLFD*






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