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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05730.2 | AT | anthranilate synthase alpha subunit 1 | JGI | N/A | IEA |
| GO:0000162 | GO-bp | tryptophan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0005950 | GO-cc | anthranilate synthase complex | EnsemblGenomes | N/A | IEA |
| GO:0004049 | GO-mf | anthranilate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016833 | GO-mf | oxo-acid-lyase activity | JGI | N/A | IEA |
| KOG1223 | KOG | Isochorismate synthase | JGI | N/A | IEA |
| PTHR11236 | Panther | AMINOBENZOATE/ANTHRANILATE SYNTHASE | JGI | N/A | IEA |
| PTHR11236:SF9 | Panther | ANTHRANILATE SYNTHASE COMPONENT 1 | JGI | N/A | IEA |
| PF00425 | PFAM | chorismate binding enzyme | JGI | N/A | IEA |
| PF04715 | PFAM | Anthranilate synthase component I, N terminal region | JGI | N/A | IEA |
| TRPSYN-PWY | SoyCyc9 | L-tryptophan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-64325 | SoyCyc9-rxn | thymidylate synthase (FAD) | Plant Metabolic Network | ISS |
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Glyma.18g028800 not represented in the dataset |
Glyma.18g028800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g03263 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g028800.1 sequence-type=CDS polypeptide=Glyma.18g028800.1.p locus=Glyma.18g028800 ID=Glyma.18g028800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTTTCTGCAACACTTCCAATGTCCCTTACGTCTGCAAAGGCCTTCTCCAGCCGCATGGTTCCTTTCGGCCACCGTCTCTCTCCGGCGACACTCACCGGCGTTTCACTCTCACGCTCTCCTCTCACGTTGAGGTGCTCTCCACTCTCAAGCACCCCTTCCTATGTTGAGGAAGGAGCAAAGTTTGTAGAGGCTTCAAAGAATGGGAACTTGATTCCTCTTTGTCAGTGCATATTCTCTGACCAGCTTACTCCTATCCTTGCTTACCGGATTTTGGTTAAGGAAGACGATCGGGAATCTCCAAGCTTTCTTTTTGAGTCTGCAGAGCCTAGTTATCATGCTTCGAGTGTCGGGCGCTATAGTGTTGTAGGAGCTCAACCTACAATGGAGGTTGTGGCGAAAGAAAATAAGGTTACAATAATTGACCATGAATCTGGGAATTTAACTGAGAAAATTGTTGATGATCCTATGATGATTCCCAGAAAAGTCTCAGAGGGTTGGAAACCCTATCTCATTAATGAGCTTCCAGATGCATTCTGTGGTGGTTGGGCAGGTTATTTCTCATATGACACTGTTCGTTATGTGGAAAAGAAAAAGCTACCATTTTCAAATGCTCCAGAGGATGACAGGAACCTTGCTGACATACATCTGGGCCTCTATGAGAATGTGATTGTGTTTGATCATGTGGAAAAGAAAGCATATGTGATTCTTTGGGTGAGGGTTGATCGGTACTCCTCGGCTGAGAGTGCTTACAAGGATGGAATGGAAAGATTAGAAAAATTAGTGGCCAAATTACAAGATGGCCAACCCCCAAGGCTGGCTCCAGGTTCTGTGGATTTACATACTCATCATTTTGGTCCATCTTTAAAGAAGTCAAGCATGACAAGTGAAGCATACAAAGAGGCAGTCCTTCAGGCAAAAGAACATATTAAAGCAGGGGATATTTTCCAGATTGCTAGGGGATGTATTCTGGTTGCTTCAAGTCCAGAGATTCTTACGCGTATAAAGAAGAACAAGATTGTGAACCGTCCCTTGGCTGGGACAGCTAAAAGGGGGAAAACACCTGAAGAAGATGCAAGGTTAGAAGCAATACTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGGTTGCAAAAAGTGGTTCAGTTAAAGTGGAAAAGCTTATGAATATTGAGCGATATTCCCATGTCATGCACATAAGCTCAACGGTTACTGGAGAGTTGCAAGATCATTTGACTAGCTGGGATGCCCTGCGAGCTGCATTGCCTGTTGGAACTGTCAGTGGAGCGCCAAAGGTGAAGGCAATGGAGTTGATTGATGAATTGGAGGTTAAAAGGCGAGGACCTTATAGTGGAGGATTTGGATACATCTCTTTCCTTGGTGAGATGGACATTGCTCTTGCTCTTAGGACTATGGTGTTTCCAACAGGAACTAGGTATGACACAATGTACTCATACAAAGACGTCGACCAACGCCATGAGTGGATTGCTTACCTTCAAGCCGGAGCTGGTATAGTTGCTGACAGTGTCCCTGATGATGAGCACCAAGAGTGTCAAAACAAAGCTGCTGGTCTTGCTCGTGCCATTGATTTGGCTGAGGCAGCTTTTGTTGATAAATGA
>Glyma.18g028800.1.p sequence-type=predicted peptide transcript=Glyma.18g028800.1 locus=Glyma.18g028800 ID=Glyma.18g028800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLSATLPMSLTSAKAFSSRMVPFGHRLSPATLTGVSLSRSPLTLRCSPLSSTPSYVEEGAKFVEASKNGNLIPLCQCIFSDQLTPILAYRILVKEDDRESPSFLFESAEPSYHASSVGRYSVVGAQPTMEVVAKENKVTIIDHESGNLTEKIVDDPMMIPRKVSEGWKPYLINELPDAFCGGWAGYFSYDTVRYVEKKKLPFSNAPEDDRNLADIHLGLYENVIVFDHVEKKAYVILWVRVDRYSSAESAYKDGMERLEKLVAKLQDGQPPRLAPGSVDLHTHHFGPSLKKSSMTSEAYKEAVLQAKEHIKAGDIFQIARGCILVASSPEILTRIKKNKIVNRPLAGTAKRGKTPEEDARLEAILLRDEKQCAEHVMLVDLGRNDVGKVAKSGSVKVEKLMNIERYSHVMHISSTVTGELQDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVKRRGPYSGGFGYISFLGEMDIALALRTMVFPTGTRYDTMYSYKDVDQRHEWIAYLQAGAGIVADSVPDDEHQECQNKAAGLARAIDLAEAAFVDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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