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Report for Sequence Feature Glyma.18g027200

Feature Type:gene_model
Chromosome:Gm18
Start:2042578
stop:2048191
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g027200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40116.1AT Phosphoinositide-specific phospholipase C family protein JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
GO:0016042GO-bp lipid catabolic process EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0004435GO-mf phosphatidylinositol phospholipase C activity EnsemblGenomesN/AIEA
GO:0004435GO-mf phosphatidylinositol phospholipase C activity JGI N/AIEA
GO:0004871GO-mf signal transducer activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008081GO-mf phosphoric diester hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0169 KOG Phosphoinositide-specific phospholipase C JGI N/AIEA
PTHR10336Panther PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN JGI N/AIEA
PTHR10336:SF35Panther JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF00387PFAM Phosphatidylinositol-specific phospholipase C, Y domain JGI N/AIEA
PF00388PFAM Phosphatidylinositol-specific phospholipase C, X domain JGI N/AIEA
PF09279PFAM Phosphoinositide-specific phospholipase C, efhand-like JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-6351SoyCyc9 D-myo-inositol (1,4,5)-trisphosphate biosynthesis Plant Metabolic Network ISS
PWY-6367SoyCyc9 D-myo-inositol-5-phosphate metabolism Plant Metabolic Network ISS
PWY-7039SoyCyc9 phosphatidate metabolism, as a signaling molecule Plant Metabolic Network ISS
GN7V-62934SoyCyc9-rxn phosphoinositide phospholipase C Plant Metabolic Network ISS

Proteins Associated with Glyma.18g027200
LocusGene SymbolProtein Name
C2-158 C2 domain containing protein gene 158

Expression Patterns of Glyma.18g027200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g027200
ParalogEvidenceComments
Glyma.11g230000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g027200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g03100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g027200
>Glyma.18g027200.2 sequence-type=transcript locus=Glyma.18g027200 ID=Glyma.18g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAAGATAAATATTTTTCCATAAATGGAACTGTCCTTGGTTCGTGGCCTCATGTATGTAGCATTCATAGTCACAACACGTATACTACAATTGCATAGTGCTGCGATCGCCGTTTCTTCTCTGAAACAAACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTAGACGATTAGCTTTTACGATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGAATTATAGGATCAGCCATATAATAATCTTAGATAATGGATATGAGGTCATTGTAATGATAATTATATTTATCTTTAGCTGCTTGCAATGGTATTTCTGGCTTTACTATGTTATATTTTCTGCACCATCAACATCAATATAAAACAGTATTAAGAACTTCCAATATTGTCACATGGCCTTTTAGATTACACTGATAGC
Coding sequences of Glyma.18g027200
>Glyma.18g027200.1 sequence-type=CDS polypeptide=Glyma.18g027200.1.p locus=Glyma.18g027200 ID=Glyma.18g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGCAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA

>Glyma.18g027200.2 sequence-type=CDS polypeptide=Glyma.18g027200.2.p locus=Glyma.18g027200 ID=Glyma.18g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA
Predicted protein sequences of Glyma.18g027200
>Glyma.18g027200.1.p sequence-type=predicted peptide transcript=Glyma.18g027200.1 locus=Glyma.18g027200 ID=Glyma.18g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKQSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR*

>Glyma.18g027200.2.p sequence-type=predicted peptide transcript=Glyma.18g027200.2 locus=Glyma.18g027200 ID=Glyma.18g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR*






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