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Report for Sequence Feature Glyma.18g024600

Feature Type:gene_model
Chromosome:Gm18
Start:1821793
stop:1824932
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g024600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40300.1AT ferritin 4 JGI N/AIEA
GO:0006826GO-bp iron ion transport EnsemblGenomesN/AIEA
GO:0006879GO-bp cellular iron ion homeostasis EnsemblGenomesN/AIEA
GO:0006879GO-bp cellular iron ion homeostasis JGI N/AIEA
GO:0006880GO-bp intracellular sequestering of iron ion EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004322GO-mf ferroxidase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0008199GO-mf ferric iron binding EnsemblGenomesN/AIEA
GO:0008199GO-mf ferric iron binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2332 KOG Ferritin JGI N/AIEA
PTHR11431Panther FERRITIN JGI N/AIEA
PTHR11431:SF8Panther JGI N/AIEA
PF00210PFAM Ferritin-like domain JGI N/AIEA
GN7V-45771SoyCyc9-rxn ferroxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g024600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g024600
ParalogEvidenceComments
Glyma.11g232600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g024600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g02800 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g024600
>Glyma.18g024600.2 sequence-type=transcript locus=Glyma.18g024600 ID=Glyma.18g024600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAAAAACCGTAGCCATGAAAATGATGAAAGAAACAAGTAGCAGTATAAACCAATTGGAGTTGGAGAGAAAAGAAGAAGAATCTAGAAAGCTGAAATGAATAGGATTCACAGCAGATATAGCAAAGCTCACACTAACATCAATTTATGATAACAACCTCAAAATCAAGTTATCAGTGTGTCACCCTGACTTTTCAAAAACAATTATTTGTTGCTTCATATTTCACTGTGATTTCATAATAGATTTTCACTCATCTTACTTGACTCCAAGCATTCTATATATCTAGTGCCTCCACGCATCTCTACCCTCAAATCTTCACCACACAACACTACCTCAATTACTCAACTAAAGCTTCATTCATTCATCGTGTCGTGTTGTGTTCTTTGCAACCATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTAAGATATCAAGATTGTTTGGTCCTAGTTTTGGATTCATAGCATGTTTGGATTTGATTCAATTTTGTCATAATCAATTCCAAAACCACGTTGAAAGCTAAAACAACAAATGGTTACTTCCACTTTTTCAAATTTTCACCATGATTTTAGGTCTTAGAATCAGCCATAGTAGCTATCCAAACCTGCATGACATTTGTCTCATTTATGTTCACTTTGATGTTTTTAAAGTGGCAATCCATATATTTGAACATGTTGGATGTTGTTTGACAGGTTGCCTCAAAGAACAATGATGTGCAATTGGCAGATTTTATTGAAAGCGAGTTTTTGGGTGAACAGGTAATGTGACGTTGCAATTTATTAAACTTTCTTATGGGTTACTGGCAGAATGGTTTGCACATGATTATATGCAAAGCACTGCAAGGAAGCTTTTGTCGATCTAAAACTCAGCACTTTTTTTTAATTATTATTTGGGTAGGTGGAAGCCATAAAAAAAATCTCTGAATACGTTGCTCAACTCAGAAGAGTTGGCAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTACTCCATGAGGAAGGAGTTGCTGCTTGATTAACATTTTTTTTCTACCTCTCGTTCGTGCATCTAGTTAGTTATTCGGATTAGTATTTTCAGGTCTTTTAATGCTAGAGATGAACAAAGTGGATATGGAGTAATATTGGTCATTTGTATGTCGTGTTTTTTTTAGTAATATTGGAGTAATATGGAATTTGCGTATTGGACTAATATGGAATTGACGTATTGTTGGAGTAATATGGAATTGAAACTCAAATTACAATT
Coding sequences of Glyma.18g024600
>Glyma.18g024600.1 sequence-type=CDS polypeptide=Glyma.18g024600.1.p locus=Glyma.18g024600 ID=Glyma.18g024600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTTGCCTCAAAGAACAATGATGTGCAATTGGCAGATTTTATTGAAAGCGAGTTTTTGGGTGAACAGGTGGAAGCCATAAAAAAAATCTCTGAATACGTTGCTCAACTCAGAAGAGTTGGCAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTACTCCATGAGGAAGGAGTTGCTGCTTGA

>Glyma.18g024600.2 sequence-type=CDS polypeptide=Glyma.18g024600.2.p locus=Glyma.18g024600 ID=Glyma.18g024600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTAAGATATCAAGATTGTTTGGTCCTAGTTTTGGATTCATAG
Predicted protein sequences of Glyma.18g024600
>Glyma.18g024600.1.p sequence-type=predicted peptide transcript=Glyma.18g024600.1 locus=Glyma.18g024600 ID=Glyma.18g024600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLRTASSFSLFNANGDHILLPSSVRYSQGKHLVPCATKNSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDESEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLTEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA*

>Glyma.18g024600.2.p sequence-type=predicted peptide transcript=Glyma.18g024600.2 locus=Glyma.18g024600 ID=Glyma.18g024600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLRTASSFSLFNANGDHILLPSSVRYSQGKHLVPCATKNSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDESEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLTEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVRYQDCLVLVLDS*






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