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Report for Sequence Feature Glyma.18g022500

Feature Type:gene_model
Chromosome:Gm18
Start:1641008
stop:1645711
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g022500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56190.1AT alpha-soluble NSF attachment protein 2 JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0035494GO-bp SNARE complex disassembly EnsemblGenomesN/AIEA
GO:0061025GO-bp membrane fusion EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005774GO-cc vacuolar membrane EnsemblGenomesN/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0005483GO-mf soluble NSF attachment protein activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0019905GO-mf syntaxin binding EnsemblGenomesN/AIEA
KOG1586 KOG Protein required for fusion of vesicles in vesicular transport, alpha-SNAP JGI N/AIEA
PTHR13768Panther SOLUBLE NSF ATTACHMENT PROTEIN (SNAP) JGI N/AIEA

Proteins Associated with Glyma.18g022500
LocusGene SymbolProtein Name
SNAP18 soluble NSF attachment protein SNAP18
SNAP18 Soluble N-Ethylmaleimide Sensitive Factor attachement protein
Rhg1 Alpha Soluble n-ethylmaleimide sensitive fusion protein Attachment Protein

Expression Patterns of Glyma.18g022500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g022500
ParalogEvidenceComments
Glyma.11g234500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g022500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g02590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g022500
>Glyma.18g022500.1 sequence-type=CDS polypeptide=Glyma.18g022500.1.p locus=Glyma.18g022500 ID=Glyma.18g022500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATCAGTTATCGAAGGGAGAGGAATTCGAGAAAAAGGCTGAGAAGAAGCTCAGCGGTTGGGGCTTGTTTGGCTCCAAGTATGAAGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTGCTTCAAGCTCGCCAAATCATGGGACAAGGCTGGAGCGACATACCTGAAGTTGGCAAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCATGTCGATGCTGCACATTGCTACAAAAAGACTAATATAAACGAGTCTGTATCTTGCTTAGACCGAGCTGTAAATCTTTTCTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTACGAGGGTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCGAACCAATGCAAACAAAAAGTTGCCCAGTTTGCTGCTCAGCTAGAACAATATCAGAAGTCGATTGACATTTATGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTATGGAGTTAAAGGACACCTTCTTAATGCTGGCATCTGCCAACTCTGTAAAGAGGACGTTGTTGCTATAACCAATGCATTAGAACGATATCAGGAACTGGATCCAACATTTTCAGGAACACGTGAATATAGATTGTTGGCGGACATTGCTGCTGCAATTGATGAAGAAGATGTTGCAAAGTTTACTGATGTTGTCAAGGAATTTGATAGTATGACCCCTCTGGATTCTTGGAAGACCACACTTCTCTTAAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA
Predicted protein sequences of Glyma.18g022500
>Glyma.18g022500.1.p sequence-type=predicted peptide transcript=Glyma.18g022500.1 locus=Glyma.18g022500 ID=Glyma.18g022500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLASCHLKLESKHEAAQAHVDAAHCYKKTNINESVSCLDRAVNLFCDIGRLSMAARYLKEIAELYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKEDVVAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT*






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