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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10180.1 | AT | slufate transporter 2;1 | JGI | N/A | IEA |
| GO:0008272 | GO-bp | sulfate transport | EnsemblGenomes | N/A | IEA |
| GO:0008272 | GO-bp | sulfate transport | JGI | N/A | IEA |
| GO:0009877 | GO-bp | nodulation | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:1902358 | GO-bp | sulfate transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005887 | GO-cc | integral component of plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0008271 | GO-mf | secondary active sulfate transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0015116 | GO-mf | sulfate transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0015116 | GO-mf | sulfate transmembrane transporter activity | JGI | N/A | IEA |
| KOG0236 | KOG | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) | JGI | N/A | IEA |
| PTHR11814 | Panther | SULFATE TRANSPORTER | JGI | N/A | IEA |
| PTHR11814:SF46 | Panther | JGI | N/A | IEA | |
| PF00916 | PFAM | Sulfate transporter family | JGI | N/A | IEA |
| PF01740 | PFAM | STAS domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| N-70 | early nodulin-70 |
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Glyma.18g018900 not represented in the dataset |
Glyma.18g018900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g238500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g02230 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g018900.1 sequence-type=CDS polypeptide=Glyma.18g018900.1.p locus=Glyma.18g018900 ID=Glyma.18g018900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTTGGAGCTCTAGTAACTCAGAGGTGGTTGCTTCAAACAAAACCACGTTAGAAGAGGTTTTGGACATTGAGAACAACATGGCTCATCAGTGGGTGCTCAATGCTCCAGAGCCACCTTCCATGCTGCGTCAGGTGGTGGACAACGTCAAGGAAACCCTCTTACCGCATCCAAATCCAAACACATTCTCTTATCTCAGGAACCAACCCTTTTCCAAACGTGCCTTTGCCTTGTTGCAAAATTTGTTTCCCATTCTTGCTTCACTCCAAAACTACAATGCCCAAAAGCTCAAGTGCGATTTAATGGCCGGTCTAACCCTTGCAATCTTCGCTATTCCCCAGTGTATGGGAAATGCGACTTTGGCGCGGCTAAGTCCTGAATATGGCCTATATACAGGAATTGTCCCACCTCTTATTTATGCCATGCTGGCGAGTTCAAGGGAGATAGTGATCGGACCTGGATCCGTGGATTCACTGCTACTTTCCTCAATGATTCAAACATTGAAAGTTCCTATTCATGATTCTAGTACTTACATCCAACTTGTTTTCACTGTGACTTTTTTTGCGGGCATTTTTCAAGTTGCTTTCGGGCTCTTTAGGTTTGGTTTTCTGGTGGAATATCTTTCACAAGCCACGATCGTGGGGTTCTTGGCAGCAGCTGCCGTGGGCATTGGACTACAACAACTGAAAGGATTATTTGGGATCGATAATTTTAACAATAAAACTGATTTGTTTTCCGTGGTGAAATCTCTTTGGACATCGTTCAAAAACCAATCAGCATGGCATCCCTACAATTTAATTATTGGATTCTCATTTCTCTGTTTCATCCTATTTACCAGATTCCTGGGGAAAAGGAACAAGAAACTGATGTGGTTGTCACACGTTGCTCCTCTCCTTTCTGTTATTGGATCATCTGCTATTGCATACAAAATAAACTTTAATGAGCTTCAAGTGAAGGACTACAAAGTTGCAGTCTTGGGACCAATTAAAGGAGGCAGCTTGAATCCAAGTTCACTCCATCAGTTAACATTTGATAGCCAAGTTGTGGGTCATTTGATCAGAATAGGGTTGACGATTGCTATTATTTCACTCACGGGATCCATTGCTGTTGGCCGATCATTTGCATCTCTAAAAGGACACAGTATTGATCCCAATAGAGAAGTGGTATCATTGGGCATAATGAACATTGTTGGATCCTTAACTTCTTGCTATATTGCATCAGGGTCTTTGTCACGTACTGCTGTGAACTATAATGCTGGATCTGAAACCATGGTCTCCATCATAGTGATGGCACTTACGGTGCTCATGTCACTTAAATTTTTGACGGGGCTTTTATATTTCACTCCGAAAGCAATCCTTGCAGCAATAATTCTCTCGGCCGTACCAGGACTGATTGACCTTAACAAAGCACGTGAAATTTGGAAGGTTGATAAAATGGATTTCCTTGCTTGCACTGGAGCCTTTTTGGGAGTCTTGTTTGCATCTGTGGAAATAGGCCTTGCAATTGGGATCGCGATATCATTTGCGAAGATAATTATAACCTCTATTCAACCTGCTATAGCGGTTATTGGAAGGCTTCCAGGAACGGCTGCATTCGGCGATGTTGAACAATATCCAATGGCTGTCAACATTCCTGGGGTTTTGATAGTCTCTTTAAAATCTTCTTGGCTTTGTTTTGCAAATGCAAATCTTGTAGAGGAAAGGATTGAGAGATGGGTGAACAATGCAAAAGCTAAGGATGGCAAAGGAGGAGAAAACACCTTCATACACGTCATTATTGATGCCTCAAGTCTTACAAATATTGACACTGTGGGAATTGCTTCTCTGGTGGAGCTCAACAAAAATTTGATTTCCAGTGGAGTAAAGTTAGCTATCGCTAACCCTAGGTGGCATGTAATTCACAAGCTAAGATTAGCTAACTTCGTGAGCAAAATTGGAGGAAGGGTTTTCCTTTCTGTAGGAGAAGCAGTAGATGCATGTGTTGGCACTAAAATGGTTGCTGTATAA
>Glyma.18g018900.1.p sequence-type=predicted peptide transcript=Glyma.18g018900.1 locus=Glyma.18g018900 ID=Glyma.18g018900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCWSSSNSEVVASNKTTLEEVLDIENNMAHQWVLNAPEPPSMLRQVVDNVKETLLPHPNPNTFSYLRNQPFSKRAFALLQNLFPILASLQNYNAQKLKCDLMAGLTLAIFAIPQCMGNATLARLSPEYGLYTGIVPPLIYAMLASSREIVIGPGSVDSLLLSSMIQTLKVPIHDSSTYIQLVFTVTFFAGIFQVAFGLFRFGFLVEYLSQATIVGFLAAAAVGIGLQQLKGLFGIDNFNNKTDLFSVVKSLWTSFKNQSAWHPYNLIIGFSFLCFILFTRFLGKRNKKLMWLSHVAPLLSVIGSSAIAYKINFNELQVKDYKVAVLGPIKGGSLNPSSLHQLTFDSQVVGHLIRIGLTIAIISLTGSIAVGRSFASLKGHSIDPNREVVSLGIMNIVGSLTSCYIASGSLSRTAVNYNAGSETMVSIIVMALTVLMSLKFLTGLLYFTPKAILAAIILSAVPGLIDLNKAREIWKVDKMDFLACTGAFLGVLFASVEIGLAIGIAISFAKIIITSIQPAIAVIGRLPGTAAFGDVEQYPMAVNIPGVLIVSLKSSWLCFANANLVEERIERWVNNAKAKDGKGGENTFIHVIIDASSLTNIDTVGIASLVELNKNLISSGVKLAIANPRWHVIHKLRLANFVSKIGGRVFLSVGEAVDACVGTKMVAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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