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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39955.1 | AT | alpha/beta-Hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004177 | GO-mf | aminopeptidase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG1454 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | N/A | IEA |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR10992:SF163 | Panther | JGI | N/A | IEA | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | N/A | IEA |
| LIPAS-PWY | SoyCyc9 | triacylglycerol degradation | Plant Metabolic Network | ISS | |
| GN7V-65107 | SoyCyc9-rxn | triacylglycerol lipase | Plant Metabolic Network | ISS |
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Glyma.18g016300 not represented in the dataset |
Glyma.18g016300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g01970 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g016300.1 sequence-type=CDS polypeptide=Glyma.18g016300.1.p locus=Glyma.18g016300 ID=Glyma.18g016300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTAGTAGCAGTAGGAGGTGTTTGAGCTTCACCACTTGGCGTGACCGGTACTTGCGGTATTCCTTCTCCCGGGCCGGACTCAAATCCACAACCACCGATCTCGGCGACGGCACCATCATGCATTGTTGGGCCCCCAAGGCCCATAACCACTCCACCACTTCCCTTCTTCTCATCCACGGCATCGGAGCCAACGCCACGTGGCAGTGGAACCACTTCATCTCCCCCCTCACGCGCCACTTCAACGTATACGTCCCCGACCTGCTCTTCTTCGGAGATTCCCACACGACACGACCCGAGAGGTCGGAGTGGTTCCAAGCGAAGTGCGTGATGGCTCTGCTGGAGGCTCTAGGGGTCCGCCAAACAAGCGTGGTGGGGCTGAGCTACGGCGGCTTTGTGGCGTATGCTGTAGCGGCGATGTTCCCGGAGAGGGTGGAGAAGGTGGTGGTGTGTTGTGCTGGCGTGTGCTTGGAGGACAGGGACATGGAGGATGAGGGAATGTTTTGGGTTAAAAGTGTTGACGAGGTTGTTAGTGTTTTGCTGCCGCAGACACCGCAGAAGGTTAGGGAACTGCTGCAGCTTACCTTCGCCAACCCTATCAAACTCTTGCCAACTTGTTTTCTCAAAGATTTCATTCATGTGATGTGTACAGAGTACCGGCAGGAGAGGACAGAACTAATTCAAGCATTGCATAAGGATAGAAAACTGTCTAATCTTCCTAAGATAACCAAGCCTATGCAAATTATCTGGGGAGAGCAGGACCAGGTATTCCCACTGGAGTTAGCTCACAGACTGAAGAGGCACGTAGGAGAGAAGGCACAACTTGTAGTCATTACGAATGCAGGGCATGCAATCAATGTAGAGAAGCCTAATGAGCTGTGCAAGAATTTAAAATCCTTCCTCATTGATCCATCCAAGCAAGAAAATCACAGCAATGGTCTAAAGGTTGACCCTCAGAAGCAGAAAAACTTTTCAGCATTGTGGATATGTATGTTTCTCGATTATTTTATGCAACAGCTATGA
>Glyma.18g016300.1.p sequence-type=predicted peptide transcript=Glyma.18g016300.1 locus=Glyma.18g016300 ID=Glyma.18g016300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGSSSRRCLSFTTWRDRYLRYSFSRAGLKSTTTDLGDGTIMHCWAPKAHNHSTTSLLLIHGIGANATWQWNHFISPLTRHFNVYVPDLLFFGDSHTTRPERSEWFQAKCVMALLEALGVRQTSVVGLSYGGFVAYAVAAMFPERVEKVVVCCAGVCLEDRDMEDEGMFWVKSVDEVVSVLLPQTPQKVRELLQLTFANPIKLLPTCFLKDFIHVMCTEYRQERTELIQALHKDRKLSNLPKITKPMQIIWGEQDQVFPLELAHRLKRHVGEKAQLVVITNAGHAINVEKPNELCKNLKSFLIDPSKQENHSNGLKVDPQKQKNFSALWICMFLDYFMQQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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