Glyma.18g014800

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Report for Sequence Feature Glyma.18g014800

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1022745
stop:	1029468
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g014800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10370.1	AT	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related	JGI	N/A	IEA
GO:0006396	GO-bp	RNA processing	EnsemblGenomes	N/A	IEA
GO:0005730	GO-cc	nucleolus	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0004004	GO-mf	ATP-dependent RNA helicase activity	EnsemblGenomes	N/A	IEA
GO:0004386	GO-mf	helicase activity	EnsemblGenomes	N/A	IEA
GO:0004386	GO-mf	helicase activity	JGI	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0008026	GO-mf	ATP-dependent helicase activity	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0922	KOG	DEAH-box RNA helicase	JGI	N/A	IEA
PTHR18934	Panther	ATP-DEPENDENT RNA HELICASE	JGI	N/A	IEA
PF00270	PFAM	DEAD/DEAH box helicase	JGI	N/A	IEA
PF00271	PFAM	Helicase conserved C-terminal domain	JGI	N/A	IEA
PF01485	PFAM	IBR domain	JGI	N/A	IEA
PF04408	PFAM	Helicase associated domain (HA2)	JGI	N/A	IEA
PF07717	PFAM	Oligonucleotide/oligosaccharide-binding (OB)-fold	JGI	N/A	IEA

Proteins Associated with Glyma.18g014800

Locus	Gene Symbol	Protein Name
	HELRP	ATP-dependent RNA helicase DEAH12, chloroplastic

Expression Patterns of Glyma.18g014800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g014800

Paralog	Evidence	Comments
Glyma.11g242300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g014800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g01820	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g014800

Limit To All Plant Sequences

>Glyma.18g014800.1 sequence-type=CDS polypeptide=Glyma.18g014800.1.p locus=Glyma.18g014800 ID=Glyma.18g014800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAATCCTCCTACCCTAATCCCACCCCTCGCCGCCACGATTTTCACCGTCCGCCACCACCCACCCACGGCTGCGGTTGGGCTCCCCGCCCCGCCTACCACCGCCCCTACCACCAATGGAGGCCCCGATTCCACCCCCACGCCGCCCGCATCGACCGCCCTCCGGAGCCCTATTTCAGGGTGGAGCTCCGCCTCGGCAGCAGCCCCCTCCACCGCGACGACGTCGAGGCCCTGATCGACGAATGCCACTCCCGGCACGACACCTTCACTTTCTACCCCGTCGACGACGTCGCCGCCGTTCTCAGTTACCGGAGCTGGGAGCAGGCGCGAGACGCCGTCGTTTGGTTCTGGGAGGCGCGGCTCGCGGAGAAGCACGATTTCACGCCGACGCTGGATTCCAACGTCGTCGTCGTCAAGGACGATGTGGATTGTCGCCTTCGACCGGTGTTCGCGAGGCACGTGAAAGGGTTGACGGAAGGGAAGGAGGTGAAGCGGTGGATGGAGGAGAGTGAACGGTTGTCGAAAGAAATTTCTCGGCTTTCGAGTTCGCTGAGTAAGCCCTTGCGACTTGGCGTGCACAACGAGTTGGTGGAGAAGAAGAAAGGGCTTGTTGATGAGAAGAATCTTGTTGAAAGGAGGTTGAAGGAGTTTGAGTCTGCGATGCAGTGTTTATTGAAGTATTTGGAGGGTGGTGTTGACGTGGAGGGTGTGACTGTCTTTAGGTTTGATGGAGGTTTTGATTGGAAGCGGATTCATTGTCTGATCAAAAGGGAGTGTCGGAGGCTTGAGGACGGGTTGCCTATTTATGCTTACCGGAGTGATATTCTTCAGGAAATACATTATCAACAGATAATGGTATTAATCGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTACTGACGAATCCATTGTGTGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCATTGGATGTTATGAAGGCCAATCAATCAAATGCTGTTCTACATTTTCATCCTCACGTGAGTTTGATTCCAGGATAGCATTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAATAATTTATCCGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGAGTTTACTTTGTAGGAGGGTTGAAATGAGACTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTGTCTGATTACTTTTTTGCTTGTGGAATTTTTCGTGTGCTTGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTATGCAGGAGATTCTGGTTCTGCTGTTGTTGCCTCATATGTTTCTGATGTTGTCAGAATGGCAACTGAGGTTCACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCTTCTGATGAGCAATTCCGTGTTTTTCAGAACTACACTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACGATTCCTGGTGTTAGGTATGTGATAGATTCTGGGCTGGTTAAAGACAGCAGATTTGATCCTGGTAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTACACGGAAGCTGATTATCAGTCTATGGACCTAAATCAAGAGCCGGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTCTGAGGATCCTTGCTTTAGGAGTGAAGGATGTGCAAGGTTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCCATAGATATGGCAATCAGAAATCTAATTCAATTAGGAGCCATTGAACTGAACAATGATGTTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTAAGAATGGGAATTGAACCTAGGCTGGGTAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAATGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCCGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGTATCAATGCCAAATCCATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATGACGTTGTTACTCCGAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTTCTCACTTGCTGAGAATGTAGCCATGTACTCCGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCAAGTTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCCAATCAATATTTGGTCTGTGTGAGTGCATTTGATTTTCAATCATTATACGACCTTTGCCCTGCTCCCCTGTTTGATGTATCCAAAATGGAAGAGCGGAAGTTGCTAATGAAGACACTGTCTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACTGCAATTTGCTTGCTCTTGTTTCACGTATAAGGAAAGCTTGTATGGATGAACGCATCTTCATCGAAGTGAATGTTGACAATAATGAAATCCACTTATATGCCTCTTCAAATGATATGGATATAGCCCTTGGGTTGGTTAACGATGTTCTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGATAAGTTTTTGTATCATGGTTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCATCCAAACATAAATGAAATTGATGACAAGGAGCTCTTGATGTTTTTTGAGAAGAATACCTCTGGTTGCATCTGTGCTGTGCACAAATTCACAGGCAATACGAGGGATGAAGATAGGGATAAGTGGGGCAGGATAACATTTATGTCCCCAGATATTGTCAGAAGAGCTGCTGAGCTAGATGGACGGGAGTTTTGTGGCTCATCCTTAAAAGTTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTTCGTTCCCTGCTGTTAAAGCAAGAATTTCTTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGACGTTGATTATATCTTGAGAGATTTCTATAACCTTGCAGTAGGAGGGAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGACAAAGAGCTTTCGGAAGCTGAAATATCAGATGTGCTAAGAACTGCTACAACTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGAAGCAGTTGGAAATCCACCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTTTTTGCCCAAAAGGAACCCTCACATTAGTCCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCCAAGGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCCTTACATTTCCTACTCCAGTGTATCGTGTGATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCAGGAATTTGAAAGGTCTTGAATGCAACCTGGACAGGACATTTAATGGTTCTCACCGAGTGAAGATAACAGCGAACGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAACTCATGTTGTCCAGAGATGGCTTTAGTCTTAAAAACTCATTGCAGCAAGAGACTGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAAACATGGTTGCTTTGGCTCAGGAGAAGGTGATACAGTCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATTCATCTGAGAGGGAGGGATCTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCATGGATTGAAAGAGAGGGTACCTGGGGTAGATCTTACACTGAACATACGTCGCCACATAATCATTCTTCATGGTAGCAAGGAGTTGAAACCGAGAGTAGAGGAAATAGTTTTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGAGAGATTTGGCAATGGACCCAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGCCATTTGTTCTGCCGGATGTGTTTGGTTGAGCAATTTGAATCTGCTATTAAAAACCAAGGCACTTTCCCGGTATGTTGTACTCACAGGGACTGTGGAGATCCCATCCTGCTTACAGATTTGAGATCTCTTTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCAACAAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGTCTGCTGGCGAGCCATTTGTTTGTAGGGCTTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGTGAGAGATACAAAGAATTCAAGGAAGATCCGGATTCATCTCTGATAGAATGGTGCAGAGGGAAAGAACAAGTTAAGTGCTGCTCGGCATGTGGATATGTAATTGAGAAGGTAGATGGGTGCAACCACGTTGAATGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGTTTAGAGTTCTTTAGTACTAGTAATGACTGTTATGACCATTTAAGAACTATACACTTAACCATATAA

Predicted protein sequences of Glyma.18g014800

Limit To All Plant Sequences

>Glyma.18g014800.1.p sequence-type=predicted peptide transcript=Glyma.18g014800.1 locus=Glyma.18g014800 ID=Glyma.18g014800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKSSYPNPTPRRHDFHRPPPPTHGCGWAPRPAYHRPYHQWRPRFHPHAARIDRPPEPYFRVELRLGSSPLHRDDVEALIDECHSRHDTFTFYPVDDVAAVLSYRSWEQARDAVVWFWEARLAEKHDFTPTLDSNVVVVKDDVDCRLRPVFARHVKGLTEGKEVKRWMEESERLSKEISRLSSSLSKPLRLGVHNELVEKKKGLVDEKNLVERRLKEFESAMQCLLKYLEGGVDVEGVTVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRSDILQEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGTDESIVCTQPRKIAAKSVAQRVQEESIGCYEGQSIKCCSTFSSSREFDSRIAFMTDHCLLQHYMSDNNLSGVSCIIIDEAHERSLNTDLLLTLLKSLLCRRVEMRLIIMSATADAKQLSDYFFACGIFRVLGRSFPVDIKYVPSDYAGDSGSAVVASYVSDVVRMATEVHKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYTGKRKVIFSTNLAETSLTIPGVRYVIDSGLVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYTEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKDVQGFDFVDAPSPSSIDMAIRNLIQLGAIELNNDVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANASSIFCRVGNEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDTILELETCLEREHDVVTPSYWRWDPCMPSNHDKNLKRVILFSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFQSLYDLCPAPLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCNLLALVSRIRKACMDERIFIEVNVDNNEIHLYASSNDMDIALGLVNDVLEYERKWLRTECMDKFLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVCHPNINEIDDKELLMFFEKNTSGCICAVHKFTGNTRDEDRDKWGRITFMSPDIVRRAAELDGREFCGSSLKVVPSQLGGDKTFSFPAVKARISWPRRLSRGFAIVKCDIKDVDYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEISDVLRTATTRRILDFFLVRGEAVGNPPCSALEEALLKEIYPFLPKRNPHISPCRVQVFAPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPTPVYRVIKEQLDEVLASFRNLKGLECNLDRTFNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLTPAVLQLMLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNMVALAQEKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDLTLNIRRHIIILHGSKELKPRVEEIVFEIARSSHHLVERFGNGPSCPICLCEVEDGYRLEGCGHLFCRMCLVEQFESAIKNQGTFPVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGTYRFCPSPDCPSIYRVADPGSAGEPFVCRACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLIEWCRGKEQVKCCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYDHLRTIHLTI*

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