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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31970.1 | AT | DNA repair-recombination protein (RAD50) | JGI | N/A | IEA |
| GO:0000722 | GO-bp | telomere maintenance via recombination | EnsemblGenomes | N/A | IEA |
| GO:0000723 | GO-bp | telomere maintenance | EnsemblGenomes | N/A | IEA |
| GO:0000724 | GO-bp | double-strand break repair via homologous recombination | EnsemblGenomes | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | JGI | N/A | IEA |
| GO:0006302 | GO-bp | double-strand break repair | EnsemblGenomes | N/A | IEA |
| GO:0006312 | GO-bp | mitotic recombination | EnsemblGenomes | N/A | IEA |
| GO:0007004 | GO-bp | telomere maintenance via telomerase | EnsemblGenomes | N/A | IEA |
| GO:0007131 | GO-bp | reciprocal meiotic recombination | EnsemblGenomes | N/A | IEA |
| GO:0016233 | GO-bp | telomere capping | EnsemblGenomes | N/A | IEA |
| GO:0032508 | GO-bp | DNA duplex unwinding | EnsemblGenomes | N/A | IEA |
| GO:0046939 | GO-bp | nucleotide phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0046940 | GO-bp | nucleoside monophosphate phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0070192 | GO-bp | chromosome organization involved in meiotic cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0090305 | GO-bp | nucleic acid phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
| GO:0000784 | GO-cc | nuclear chromosome, telomeric region | EnsemblGenomes | N/A | IEA |
| GO:0000790 | GO-cc | nuclear chromatin | EnsemblGenomes | N/A | IEA |
| GO:0000794 | GO-cc | condensed nuclear chromosome | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0030870 | GO-cc | Mre11 complex | EnsemblGenomes | N/A | IEA |
| GO:0035861 | GO-cc | site of double-strand break | EnsemblGenomes | N/A | IEA |
| GO:0000014 | GO-mf | single-stranded DNA endodeoxyribonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0003691 | GO-mf | double-stranded telomeric DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0004003 | GO-mf | ATP-dependent DNA helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004017 | GO-mf | adenylate kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004518 | GO-mf | nuclease activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0008408 | GO-mf | 3'-5' exonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0043047 | GO-mf | single-stranded telomeric DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051880 | GO-mf | G-quadruplex DNA binding | EnsemblGenomes | N/A | IEA |
| KOG0962 | KOG | DNA repair protein RAD50, ABC-type ATPase/SMC superfamily | JGI | N/A | IEA |
| PTHR18867 | Panther | RAD50 | JGI | N/A | IEA |
| PF04423 | PFAM | Rad50 zinc hook motif | JGI | N/A | IEA |
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Glyma.18g002400 not represented in the dataset |
Glyma.18g002400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g00530 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g002400.1 sequence-type=CDS polypeptide=Glyma.18g002400.1.p locus=Glyma.18g002400 ID=Glyma.18g002400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTACTGTTGATAAAATGTTGATCAAGGGCATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAATGGTGCTGGCAAGACAACCATCATTGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCACCTAACGCTAGGTCTGGCCACAGCTTCATCCACGACCCAAAGGTTGCGGGGGAAACCGAAACAAAGGGTCAGATTAAGCTCCGTTTCAAAACGGCCGCCGGTAAAGACGTGGTCTGCGTAAGGTCCTTTCAGCTCACACAGAAGGCCTCCAAGATGGAATACAAGGCTATCGAAAGTGTGCTTCAAACTATTAATCCTCACACTGGCGAGAAAGTTTGCCTCAGCTATCGATGCGCTGACATGGATAAAGAGATTCCTGCCCTCATGGGCGTCTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCATCAAGATGAAGCCAACTGGCCTCTCCAGGATCCTTCTACCTTAAAGAAAAAGTTCGACGATATCTTTTCCGCTACCAGATACACCAAGGCACTCGAAGTTATAAAGAAACTTCACAAGGAGCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAATCTTCAGACTCTCAAAGATGCTGCTTACAAGCTTCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCTGCAGAATGTCAACTGCAACAGTTGGATGGCAGCATTCAAGAATTGGATCATAAAATTCATCACACGGAGGAAACATTGAAATATTTGCGGAAGCTGCAGGAGCAGATATCAACTAAAACTGCTCAACGAAGCATCCTGTTTAAGGAACAACAGAAACAATATCTAGCTCTCACTGAGGAGATTGAAGACACCGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAAGTTTAGAAACAAAAATAAGCAGGTTGGAAAGAGAAACGGAGGACATTGACTGTACAAGTTCTACCCTTAAGGAGACCATTGCTGAATCCATCGAAGTGATTGCCAAGCTACAAGCTGAAGCAGAAGCTCACATGTCATTCAAGAATGAACGTGATTCCTCCATTCACAATCTTTTCACTACATATAACTTGGGATCTCTTCCAAAGTCACCTTTCAGTGCTGAGGTTGCTTTAAACCTCACTAATCGTGTAAAATCAAGGTTGGAAGATCTTGAGAAGGACCTGGATGATAAAAAGAAGGCAAATGACAATGAAATCAAGATGGCATTTGATTGCTACATGAATGCAAATGACCGTTTGAAACATACTGAGGCTAAAATAAAGGCTATGACAGGGAGCAAGAGTGGCATTTCGAAGCGTATTGAAGAGAAGAAAAATGAGCTTGATTCACTTGAACTTCAAATATCTGATGAAAACTTCTCTCAATTAGATGAAAGAGAAAGAAATTTGGAAAATGAGGTTAAGAGGAAGGCAAGCCAACTCGACGAAAGACAATTTGAACCAAATAAATGTGAAGTGGAAAAGGAGATATATAGTGTAGATCAAAAGATTAAGGCTGTCAGTCGAGAGAAGGATATCATGGTTTCTGATTCACAGGACAGAGTTAAGCTATCTTATAAGAAGGGAGAGTTGGAAAGTCAGAAGAAGAAACATAAAAAGATAATTGATGAACAAAAGGACAAAATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAGAAGGAAATTATGCAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGACCTGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATGTGTTGCAGGTGAAAATACAAGAAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATATATTGAATCTAAGCTTCAGTCTTTGGACCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAAAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTAATCATGTTTGCCCTTGCTGTGAGCGTCCTTTTTCTCCAGAAGAAGAAGACAGTTTTGTCAAAAAGCAAAGAGTGAAGGCTACCAGTTCAGCTGGACATATGAAAGTTCTCGCCGTAGAATCCTCAAATGCAGAGTCTCATTTTCAGCAATTGGACAAGCTTCGTATGCTTTATGAAGAATATGTTAAACTTGGCAAGGAAACAATCCCTAATTCCGAAAAGGAACTTCAGCAACTTAAAGAAGAGATGGATGACAAATCTCAGGCTCTTGATGATGTTTTAGGCGTTTTAGCACAAGTAAAATCTGACAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGACCGGATTTTCCAAGAAATTCAAGCTTTACAAAAGCAAGTTGAGGATTTAGAAGATAAGCATAATTTTCGAGCACAGGGAGTGAGGACTCTAGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACAAAGGAGAATTTGCAATCTGAATTGGATCGGTTGAAGGATGAACAGAGGTATATGGAGAAGGATCTATCAAGTATTCAAATGCGGTGGCACACTGTAAGGGAGGAAAAAACAAAGGCAACTAACATATTGCAAGGTGTTAAAAGATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAAGACCCAAGTTGATCTCGACGAGAAGCATTTGGCAGATGCTCTTGGACCTTTATCCAAGGAGACAGACAAATTACTTGCTAACCATAATGAACTGAAAATTAGACTCGAGCGTGAGTATGAGGACCTGGCTGAACAGAAGAGAAGTTATCAACAAGAAGCTCAAGCACTTTTTAAAATGAATTCTAAGATCAAAACGTATTCTGATTTAAAGAAAGGAGACAGGCTAAAGGAACTGCAGGAAAAGAAATCTTCATCAGAATCTCAACTTCAAAGTTTTGATACAAGGAAGCAGGAAATTTTAGCTGAACTAAACAAAAGTAAAGATTTGATGCGAGGTCAAGATCAACTAAAAAGAAATATTGAGGACAACTTAAATTACCGGAAAACAAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGAAACAATGGAAGAAAATATATTGAAGGCTGGTAGGATTTCCACAGTTGAAACTGAACTCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGTTAAACAGGTGCCGTGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGACCAACTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTAGACAGATACTACAGTGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAGCAAACCTATAGAGGACAAGATATAGACTACATCAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCCTCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCACTGGACGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTAGCTGCAGCTCTCGTAAGGATCATGGAGGACAGGAAAGGGCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATAGGGCAGCGCCAGCATGCAGAGAGATATTATCGTGTCGCCAAAGATGACCATCAGCACAGTATAATCGAAAGCCAGGAGATATTTGACTGA
>Glyma.18g002400.1.p sequence-type=predicted peptide transcript=Glyma.18g002400.1 locus=Glyma.18g002400 ID=Glyma.18g002400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESAECQLQQLDGSIQELDHKIHHTEETLKYLRKLQEQISTKTAQRSILFKEQQKQYLALTEEIEDTDEELMEWKTKFEERIASLETKISRLERETEDIDCTSSTLKETIAESIEVIAKLQAEAEAHMSFKNERDSSIHNLFTTYNLGSLPKSPFSAEVALNLTNRVKSRLEDLEKDLDDKKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISDENFSQLDERERNLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSREKDIMVSDSQDRVKLSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQALRAVGAEFDDLNAKYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQCSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEEDSFVKKQRVKATSSAGHMKVLAVESSNAESHFQQLDKLRMLYEEYVKLGKETIPNSEKELQQLKEEMDDKSQALDDVLGVLAQVKSDKDLVETLVQPVENADRIFQEIQALQKQVEDLEDKHNFRAQGVRTLEEIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNILQGVKRLEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLANHNELKIRLEREYEDLAEQKRSYQQEAQALFKMNSKIKTYSDLKKGDRLKELQEKKSSSESQLQSFDTRKQEILAELNKSKDLMRGQDQLKRNIEDNLNYRKTKAEVDELAHEIETMEENILKAGRISTVETELQKLSQERERLLSELNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYSALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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