Glyma.18G252300

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Report for Sequence Feature Glyma.18G252300

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53905062
stop:	53905983
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18G252300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44840.1	AT	ethylene-responsive element binding factor 13	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
PF00847	PFAM	AP2 domain	JGI	N/A	IEA

Proteins Associated with Glyma.18G252300

Locus	Gene Symbol	Protein Name
	EREBP1	ethylene-responsive element binding protein 1
	ERF141	Ethylene-responsive factor gene 141

Expression Patterns of Glyma.18G252300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18G252300

Paralog	Evidence	Comments
Glyma.09g242600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18G252300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g252300	Wm82.a4.v1	ISS	As supplied by JGI
Glyma18g48730	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18G252300

Limit To All Plant Sequences

>Glyma.18g252300.1 sequence-type=CDS polypeptide=Glyma.18g252300.1.p locus=Glyma.18g252300 ID=Glyma.18g252300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTCCGCCACCGTGGATTCCGATTTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGATTCCATCAATCTCATGTCTGAAACCCACCAAGCTGCATCTCATGATCCATTTTCAGACCCTAATAAATGTGATGGTGATTCAGGGAACATTGCTTTCCGAAGTGAGGATGCAACGGCTGTGGTAGCGCGTGATCATGCGCCACCAACATGGAAGCATTACAGAGGGGTGAGGCGTAGACCGTGGGGAAAGTTTGCGGCCGAGATTAGGGATCCAAAGAAGAACGGAGCTAGGGTTTGGCTTGGCACGTATGATACCGAAGAGAAGGCCGCTTTGGCATATGACAAAGCCGCTTTCAAAATGCGAGGCCAAAAGGCCAAGCTGAATTTTCCTCATCTTATTGATTCCGACAATTCCGATGAATTGTCGGAGCCAGTAATGATGACAACTTCCAAGCGAAGTTTGTTAGAAATTTCATCACCGTCGTCCTCGTGTTCAGATGATAGCTCAGAATCACAAGGGACAAAGAGGAGGAAGAGCCTGGCTGAACTACTGAATAAATTAGCCAAGAATAGAAGCCAAGTCAAGGTGGAATGTTGA

Predicted protein sequences of Glyma.18G252300

Limit To All Plant Sequences

>Glyma.18g252300.1.p sequence-type=predicted peptide transcript=Glyma.18g252300.1 locus=Glyma.18g252300 ID=Glyma.18g252300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSATVDSDFAFLESVQQYLLGHDSINLMSETHQAASHDPFSDPNKCDGDSGNIAFRSEDATAVVARDHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNSDELSEPVMMTTSKRSLLEISSPSSSCSDDSSESQGTKRRKSLAELLNKLAKNRSQVKVEC*

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