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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.18G090200

Feature Type:gene_model
Chromosome:Gm18
Start:8946268
stop:8948159
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18G090200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15020.1AT hAT transposon superfamily JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02892PFAM BED zinc finger JGI N/AIEA
PF04937PFAM Protein of unknown function (DUF 659) JGI N/AIEA

Expression Patterns of Glyma.18G090200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18G090200 not represented in the dataset
Glyma.18G090200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.



Coding sequences of Glyma.18G090200
>Glyma.18g090200.1 sequence-type=CDS polypeptide=Glyma.18g090200.1.p locus=Glyma.18g090200 ID=Glyma.18g090200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGCTTCTAGTCCTAGTCAAGCTAAAGAACAAGATGATGATACCAAACCTTTATGGACCTATGTTACAAAGGTAAAAAGTGTAGCTGGTGGTGGAAATTATGAGATAAAATGTAATATTTGTGATTTTACCTTTAATGGGTCTTACACTAGAGTGAGGGCACACTTGTTGAAGATGACAGGAAAGGGAGTTAGAGTTTGTCAAAAGGTAACAGTTGCCAAACTTATAGATTTGAAGAAGATAGACAATGAGGCTACATTGAGGGTGGAGAGTCTTGGTGTTGATCCAAAAAAGAGAAAGGCATCATCTGTAGAAAATGCCTTTAATTTGCAAGCTAGAGAGACACCTGATCATGAAATTGCTAGGATGTTTTACTCTTCAGGGCTGCCTTTTCATTTAGCAAGAAATCCTCATTATAGGAAGGCATTTGCCTATGCTGCCAACAATCAGATCAGTGGTTACCAACCTCCAGGTTATAATAAATTAAGGACAACATTACTTCAAAACGAGAGAAGACATGTGGAGAATTTGTTACAACCAATTAAAAATGCATGGAGCCAGAAGGGTGTGAGCATTGTTAGTGATGGATGGAGTGACCTGCAAAGAAGATCTCTTATTAATTTCATGGTTGTCACGGAGAGTGGACCTATGTTTTTAAAGGCCATTGATTGTTCAAATGAGATCAAAGACAAGGATTTCATTGCCAAACATATGAGGGAGGTAATTATGGAGGTTGGGCACTCAAATGTTGTGCGAATAGTGATGGATAATGCAGCCGTTTGTAAAGTAGCAGGTTTAATAATTGAGGCTGAGTTTCCTTCCATCTATTGGACTTCATGTGTTGTCCATACATTAAATCTTGCTTTGAAGAACATATGTGCAACCAAGAATACAGAAAAAAAAATAATGCTGCTTATGAAGAATAGATTCAAGCAATTGAAGAAAGGACTCCAAGAGATGGTCATTAGTGACCAATGGTCTTCTTATAAGGAAGATGATGTTGCAAAGGCTAAATTTGTGAAAGATACTTTGTTGGATGATAAATGGTGGGATAAGGTTGATTATATTCTTTCTTTCACTAGCCCTATCTATGATGTTCTTAGAAGAACGAATACAGAAGCTTCATCTCTCCATCTAGTATATGAGATGTGGGATTCAATGATTGAAAAGGTGAAGAATGTCATATATCAATATGAGAGAAAGGAGGAGAGTGAAGGATCAACCTTTTATGAGATAGTGCACTCCATATTAATTGACCGTTGGACTAAGAGTAGCACTCCTCTTCATTGTTTAGCTCATTCTTTAAATCCTAGATATTATAGTCATGAATGGTTAAGTGAAGATTGTAATCGAGTTCCTCCACATCAAGACATGGGACTCACTCGTGAAAGATTAAAATGCTTCAAGAGGTTCTTTCCTGATGTGAATGTAAGGAGGAAAGTGAATATTGAGTTTGCCAACTTCTCGGATGGAAGAGAAGGTTTTGATGATCTTGATTCTTTAAATGATAGAGTTCAAATGGATCCAAAAGCTTGGTGGCTAGTTCATGGCATTAATGCTCCAATACTTCAAAAGATTGCCCTTTAG
Predicted protein sequences of Glyma.18G090200
>Glyma.18g090200.1.p sequence-type=predicted peptide transcript=Glyma.18g090200.1 locus=Glyma.18g090200 ID=Glyma.18g090200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSASSPSQAKEQDDDTKPLWTYVTKVKSVAGGGNYEIKCNICDFTFNGSYTRVRAHLLKMTGKGVRVCQKVTVAKLIDLKKIDNEATLRVESLGVDPKKRKASSVENAFNLQARETPDHEIARMFYSSGLPFHLARNPHYRKAFAYAANNQISGYQPPGYNKLRTTLLQNERRHVENLLQPIKNAWSQKGVSIVSDGWSDLQRRSLINFMVVTESGPMFLKAIDCSNEIKDKDFIAKHMREVIMEVGHSNVVRIVMDNAAVCKVAGLIIEAEFPSIYWTSCVVHTLNLALKNICATKNTEKKIMLLMKNRFKQLKKGLQEMVISDQWSSYKEDDVAKAKFVKDTLLDDKWWDKVDYILSFTSPIYDVLRRTNTEASSLHLVYEMWDSMIEKVKNVIYQYERKEESEGSTFYEIVHSILIDRWTKSSTPLHCLAHSLNPRYYSHEWLSEDCNRVPPHQDMGLTRERLKCFKRFFPDVNVRRKVNIEFANFSDGREGFDDLDSLNDRVQMDPKAWWLVHGINAPILQKIAL*






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