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Report for Sequence Feature Glyma.18G054400

Feature Type:gene_model
Chromosome:Gm18
Start:4717580
stop:4720563
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18G054400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31720.1AT TBP-associated factor II 15 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation EnsemblGenomesN/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
PTHR21242Panther TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10 JGI N/AIEA
PF03540PFAM Transcription initiation factor TFIID 23-30kDa subunit JGI N/AIEA

Proteins Associated with Glyma.18G054400
LocusGene SymbolProtein Name
WRKY75 WRKY75 transcription factor

Expression Patterns of Glyma.18G054400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18G054400
ParalogEvidenceComments
Glyma.11g160400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18G054400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g054400 Wm82.a4.v1ISS As supplied by JGI
Glyma18g06110 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18G054400
>Glyma.18g054400.1 sequence-type=CDS polypeptide=Glyma.18g054400.1.p locus=Glyma.18g054400 ID=Glyma.18g054400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAGAACCCGCAATCGAGTGAAGGAAGGAACGATGACGATTCTGCCCTTTCTGATTTCCTCGCTTCCTTAATGGATTATACTCCCACTATACCTGATGAATTGGTGGAGCATTACTTGGCCAAGAGCGGTTTCCAATGTCCCGATGTTCGATTGACTAGATTGGTAGCTGTTGCCACTCAGAAGTTTGTTGCTGAAGTTGCAGGAGATGCACTTCAGCACTGCAAAGCAAGACAAGCAACAATTCCAAAAGACAAAAGGGACAAGCAGCAGAAGGATAAGCGCCTAGTTTTGACAATGGAAGACCTTTCAAAGGCATTGCGTGAGTATGGCGTGAATTTAAAGCATCAAGAATATTTTGCTGATAGCCCTTCTACCGGAATGGATCCTGCTACCCGAGAAGAATGA
Predicted protein sequences of Glyma.18G054400
>Glyma.18g054400.1.p sequence-type=predicted peptide transcript=Glyma.18g054400.1 locus=Glyma.18g054400 ID=Glyma.18g054400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQNPQSSEGRNDDDSALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKDKRLVLTMEDLSKALREYGVNLKHQEYFADSPSTGMDPATREE*






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