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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68890.1 | AT | magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases | JGI | N/A | IEA |
| GO:0009234 | GO-bp | menaquinone biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0030976 | GO-mf | thiamine pyrophosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0070204 | GO-mf | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity | EnsemblGenomes | N/A | IEA |
| PTHR18968 | Panther | THIAMINE PYROPHOSPHATE ENZYMES | JGI | N/A | IEA |
| PTHR18968:SF79 | Panther | JGI | N/A | IEA | |
| PWY-5791 | SoyCyc9 | 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | Plant Metabolic Network | ISS | |
| PWY-5837 | SoyCyc9 | 1,4-dihydroxy-2-naphthoate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5863 | SoyCyc9 | superpathway of phylloquinol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-66300 | SoyCyc9-rxn | 1,4-dihydroxy-2-naphthoyl-CoA hydrolase | Plant Metabolic Network | ISS |
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Glyma.17g262200 not represented in the dataset |
Glyma.17g262200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g38200 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g262200.1 sequence-type=CDS polypeptide=Glyma.17g262200.1.p locus=Glyma.17g262200 ID=Glyma.17g262200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTCATGTTATCCTTGGTACTCAAGCAACACATTAAATTTCTGTATCAGGTGAACCATTTTGGTTCTTTTGTGAGATTTATCTTTAATCTCCCTGCACCCACAGATCAAATTCCTGCAAAAATGGTACTTACCACTCTTAATTCTGCTGTACATTGGGCAACTTCTTCACCATGTGGTCCAGTGCATATTAACTGCCCTTTTAGAGAGCCTTTGGAAAGCAGTCCCTGCAGATGGTTGTCAAGCTGTTTATCTGGGTTAGACTTGTGGATGGCTAATGCTGAACCATTTACCAAGTATATTCATATGCAATTGTCTCATACTTGTTTAAATGCTCCTGGTGAAATGACTGAAGTTTTAAATCTGATTCCAAGGGCCAATAATAGTCTTCTATTATTTGGTGCAATCCATACAGAGGATGAGATGTGGGCTGCTCTGCTTTTGGCTAAACACCTTCAGTGGCCTGTTGTAGCAGATATCTTGTCTGGGTTGCGGCTAAGAAAACTTTTAACTTCTTTTCCTGATATTGAAAGAAACTTTATATTTGTTGACAATCTTGATCATGCTCTTCTCTCAGATTCTGTCAAGGGCTGGTTAGAGGTTGATGTGGTTATTCAGATAGGAAGCAGGATAACTAGCAAACGGATCTGCCAAATTATTGAGGATTGTGCTCCTTTTTCATATATTATGGTTGACAAGCATCCACATCGTCATGATCCAACACAGATTGTAACTCATCGTATACAAACTTCCATTTTTGAATTTGTGGGCTGTGTACTTAAAGCTGCAGTTCCGCATACAAGGAGCTTGTGGAGCACTTCCCTACAATTGTTGAGTAAAATGGTATTAATTTCAGTAATGAAAAGTTACTTCTTGTTATGGTAA
>Glyma.17g262200.1.p sequence-type=predicted peptide transcript=Glyma.17g262200.1 locus=Glyma.17g262200 ID=Glyma.17g262200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFMLSLVLKQHIKFLYQVNHFGSFVRFIFNLPAPTDQIPAKMVLTTLNSAVHWATSSPCGPVHINCPFREPLESSPCRWLSSCLSGLDLWMANAEPFTKYIHMQLSHTCLNAPGEMTEVLNLIPRANNSLLLFGAIHTEDEMWAALLLAKHLQWPVVADILSGLRLRKLLTSFPDIERNFIFVDNLDHALLSDSVKGWLEVDVVIQIGSRITSKRICQIIEDCAPFSYIMVDKHPHRHDPTQIVTHRIQTSIFEFVGCVLKAAVPHTRSLWSTSLQLLSKMVLISVMKSYFLLW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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