SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35090.1 | AT | catalase 2 | JGI | N/A | IEA |
| GO:0006979 | GO-bp | response to oxidative stress | EnsemblGenomes | N/A | IEA |
| GO:0042542 | GO-bp | response to hydrogen peroxide | EnsemblGenomes | N/A | IEA |
| GO:0042744 | GO-bp | hydrogen peroxide catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0098869 | GO-bp | cellular oxidant detoxification | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0009514 | GO-cc | glyoxysome | EnsemblGenomes | N/A | IEA |
| GO:0004096 | GO-mf | catalase activity | EnsemblGenomes | N/A | IEA |
| GO:0004096 | GO-mf | catalase activity | JGI | N/A | IEA |
| GO:0004601 | GO-mf | peroxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0047 | KOG | Catalase | JGI | N/A | IEA |
| PTHR11465 | Panther | CATALASE | JGI | N/A | IEA |
| PF00199 | PFAM | Catalase | JGI | N/A | IEA |
| PF06628 | PFAM | Catalase-related immune-responsive | JGI | N/A | IEA |
| DETOX1-PWY | SoyCyc9 | superoxide radicals degradation | Plant Metabolic Network | ISS | |
| DETOX1-PWY-1 | SoyCyc9 | reactive oxygen species degradation | Plant Metabolic Network | ISS | |
| GN7V-61479 | SoyCyc9-rxn | catalase-peroxidase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CAT1 | catalase |
|
Glyma.17g261700 not represented in the dataset |
Glyma.17g261700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g223500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g38140 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g261700.1 sequence-type=CDS polypeptide=Glyma.17g261700.1.p locus=Glyma.17g261700 ID=Glyma.17g261700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCCCTACAAGAATCGGCCATCAAGCGCCTTCAATTCTCCCTTCTGGACTACAAATTCCGGTGCTCCCATCTGGAACAATAACTCATCGCTGACTGTTGGATCTAGAGGTCCAATTCTGCTGGAGGATTACCATCTGGTGGAGAAGCTTGCAAACTTTGACAGGGAACGGATCCCCGAACGTGTTGTCCACGCTCGTGGAGCTAGCGCAAAGGGTTTCTTTGAAGTCACGCATGACATTTCTCACCTCACATGTGCCGATTTCCTTCGAGCCCCTGGAGTTCAGACCCCCCTCATCGTCCGTTTCTCCACTGTTATCCACGAGCGTGGCAGCCCCGAAACCCTCAGGGATCCCAGAGGTTTTGCTGTCAAATTCTACACCAGAGAGGGTAACTTCGACCTTGTGGGAAACAACTTCCCTGTCTTCTTCGTCCGCGATGGCCTCAAGTTTCCTGACATGGTTCATGCCCTCAAACCCAACCCCAAGTCCCACATCCAGGAGAATTGGAGGATCCTCGATTTCTTCTCCCACCATCCCGAAAGCCTTCACATGTTCTCCTTCTTATTCGACGACGTTGGTATCCCTCAAGATTACAGGCATATGGATGGCTTCGGTGTCAACACCTACACCCTTATCAACAAGGCCGGCAAAGCACTCTATGTCAAATTTCATTGGAAGACCACCTCTGGCGAAAAGTCTCTTTTGGACGACGAGGCCATCAGGGTTGGAGGATCCAACCACAGTCATGCCACCCAGGACCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAACTCTACATCCAAACATTGGATCCCGAAAACGAAGACAGGCTTGACTTTGACCCCCTTGATGTTACTAAGACCTGGCCCGAGGACGTTTTGCCCCTCCAGCCTGTTGGCCGCATGGTCTTGAATAAGAACATTGATAACTTCTTTGCCGAGAATGAACAACTTGCATTTTGCCCTGCCATTATTGTACCTGGTGTATACTACTCCGATGATAAATTGCTTCAAACTCGCGTATTCTCCTATGCTGATACCCAGAGACACAGACTTGGACCAAATTATCTGCAGCTTCCTGCTAATGCCCCTAAGTGTGCCCATCACAACAATCACCATGATGGTTTCATGAATTTCATGCACAGGGATGAAGAGGTCAATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCGGAAAAGGTCCCCGTTCCTCCTCGTATCCTAGGTGGGAAGCGTGAAAAGTGCATGATTGAGAAGGAGAACAACTTCAAGCAACCTGGGGAGAGATACCGATCCTGGCCCTCTGACAGGCAAGAAAGGTTTGTCCGCCGATGGGTTGATGCTTTGTCTGACCCACGTGTCACCCATGAAATCCGTAGCATCTGGATATCATACTGGTCTCAGGCTGATCGTTCTCTTGGACAAAAGATAGCATCTCACCTGAACTTGAAGCCAAGTATCTAA
>Glyma.17g261700.1.p sequence-type=predicted peptide transcript=Glyma.17g261700.1 locus=Glyma.17g261700 ID=Glyma.17g261700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDPYKNRPSSAFNSPFWTTNSGAPIWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGLKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDVGIPQDYRHMDGFGVNTYTLINKAGKALYVKFHWKTTSGEKSLLDDEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTLDPENEDRLDFDPLDVTKTWPEDVLPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKLLQTRVFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRYDPVRHAEKVPVPPRILGGKREKCMIEKENNFKQPGERYRSWPSDRQERFVRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNLKPSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
