Glyma.17g261700

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Report for Sequence Feature Glyma.17g261700

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41553171
stop:	41556515
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g261700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35090.1	AT	catalase 2	JGI	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	EnsemblGenomes	N/A	IEA
GO:0042542	GO-bp	response to hydrogen peroxide	EnsemblGenomes	N/A	IEA
GO:0042744	GO-bp	hydrogen peroxide catabolic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0098869	GO-bp	cellular oxidant detoxification	EnsemblGenomes	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0005777	GO-cc	peroxisome	EnsemblGenomes	N/A	IEA
GO:0009514	GO-cc	glyoxysome	EnsemblGenomes	N/A	IEA
GO:0004096	GO-mf	catalase activity	EnsemblGenomes	N/A	IEA
GO:0004096	GO-mf	catalase activity	JGI	N/A	IEA
GO:0004601	GO-mf	peroxidase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0047	KOG	Catalase	JGI	N/A	IEA
PTHR11465	Panther	CATALASE	JGI	N/A	IEA
PF00199	PFAM	Catalase	JGI	N/A	IEA
PF06628	PFAM	Catalase-related immune-responsive	JGI	N/A	IEA
DETOX1-PWY	SoyCyc9	superoxide radicals degradation	Plant Metabolic Network		ISS
DETOX1-PWY-1	SoyCyc9	reactive oxygen species degradation	Plant Metabolic Network		ISS
GN7V-61479	SoyCyc9-rxn	catalase-peroxidase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.17g261700

Locus	Gene Symbol	Protein Name
	CAT1	catalase

Expression Patterns of Glyma.17g261700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g261700

Paralog	Evidence	Comments
Glyma.14g223500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g261700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g38140	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.17g261700

Limit To All Plant Sequences

>Glyma.17g261700.1 sequence-type=CDS polypeptide=Glyma.17g261700.1.p locus=Glyma.17g261700 ID=Glyma.17g261700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCTACAAGAATCGGCCATCAAGCGCCTTCAATTCTCCCTTCTGGACTACAAATTCCGGTGCTCCCATCTGGAACAATAACTCATCGCTGACTGTTGGATCTAGAGGTCCAATTCTGCTGGAGGATTACCATCTGGTGGAGAAGCTTGCAAACTTTGACAGGGAACGGATCCCCGAACGTGTTGTCCACGCTCGTGGAGCTAGCGCAAAGGGTTTCTTTGAAGTCACGCATGACATTTCTCACCTCACATGTGCCGATTTCCTTCGAGCCCCTGGAGTTCAGACCCCCCTCATCGTCCGTTTCTCCACTGTTATCCACGAGCGTGGCAGCCCCGAAACCCTCAGGGATCCCAGAGGTTTTGCTGTCAAATTCTACACCAGAGAGGGTAACTTCGACCTTGTGGGAAACAACTTCCCTGTCTTCTTCGTCCGCGATGGCCTCAAGTTTCCTGACATGGTTCATGCCCTCAAACCCAACCCCAAGTCCCACATCCAGGAGAATTGGAGGATCCTCGATTTCTTCTCCCACCATCCCGAAAGCCTTCACATGTTCTCCTTCTTATTCGACGACGTTGGTATCCCTCAAGATTACAGGCATATGGATGGCTTCGGTGTCAACACCTACACCCTTATCAACAAGGCCGGCAAAGCACTCTATGTCAAATTTCATTGGAAGACCACCTCTGGCGAAAAGTCTCTTTTGGACGACGAGGCCATCAGGGTTGGAGGATCCAACCACAGTCATGCCACCCAGGACCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAACTCTACATCCAAACATTGGATCCCGAAAACGAAGACAGGCTTGACTTTGACCCCCTTGATGTTACTAAGACCTGGCCCGAGGACGTTTTGCCCCTCCAGCCTGTTGGCCGCATGGTCTTGAATAAGAACATTGATAACTTCTTTGCCGAGAATGAACAACTTGCATTTTGCCCTGCCATTATTGTACCTGGTGTATACTACTCCGATGATAAATTGCTTCAAACTCGCGTATTCTCCTATGCTGATACCCAGAGACACAGACTTGGACCAAATTATCTGCAGCTTCCTGCTAATGCCCCTAAGTGTGCCCATCACAACAATCACCATGATGGTTTCATGAATTTCATGCACAGGGATGAAGAGGTCAATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCGGAAAAGGTCCCCGTTCCTCCTCGTATCCTAGGTGGGAAGCGTGAAAAGTGCATGATTGAGAAGGAGAACAACTTCAAGCAACCTGGGGAGAGATACCGATCCTGGCCCTCTGACAGGCAAGAAAGGTTTGTCCGCCGATGGGTTGATGCTTTGTCTGACCCACGTGTCACCCATGAAATCCGTAGCATCTGGATATCATACTGGTCTCAGGCTGATCGTTCTCTTGGACAAAAGATAGCATCTCACCTGAACTTGAAGCCAAGTATCTAA

Predicted protein sequences of Glyma.17g261700

Limit To All Plant Sequences

>Glyma.17g261700.1.p sequence-type=predicted peptide transcript=Glyma.17g261700.1 locus=Glyma.17g261700 ID=Glyma.17g261700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPYKNRPSSAFNSPFWTTNSGAPIWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGLKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDVGIPQDYRHMDGFGVNTYTLINKAGKALYVKFHWKTTSGEKSLLDDEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTLDPENEDRLDFDPLDVTKTWPEDVLPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKLLQTRVFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRYDPVRHAEKVPVPPRILGGKREKCMIEKENNFKQPGERYRSWPSDRQERFVRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNLKPSI*

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