Glyma.17g260500

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.17g260500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.17g260500): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.17g260500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41457518
stop:	41462823
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g260500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20200.1	AT	PAM domain (PCI/PINT associated module) protein	JGI	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0042176	GO-bp	regulation of protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0042176	GO-bp	regulation of protein catabolic process	JGI	N/A	IEA
GO:0050790	GO-bp	regulation of catalytic activity	EnsemblGenomes	N/A	IEA
GO:0000502	GO-cc	proteasome complex	EnsemblGenomes	N/A	IEA
GO:0000502	GO-cc	proteasome complex	JGI	N/A	IEA
GO:0008541	GO-cc	proteasome regulatory particle, lid subcomplex	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0030234	GO-mf	enzyme regulator activity	EnsemblGenomes	N/A	IEA
GO:0030234	GO-mf	enzyme regulator activity	JGI	N/A	IEA
KOG2581	KOG	26S proteasome regulatory complex, subunit RPN3/PSMD3	JGI	N/A	IEA
PTHR10758	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	JGI	N/A	IEA
PTHR10758:SF2	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3	JGI	N/A	IEA
PF01399	PFAM	PCI domain	JGI	N/A	IEA
PF08375	PFAM	Proteasome regulatory subunit C-terminal	JGI	N/A	IEA

Expression Patterns of Glyma.17g260500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g260500 not represented in the dataset	Glyma.17g260500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g260500

Paralog	Evidence	Comments
Glyma.14g221600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g260500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g38000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g260500

Limit To All Plant Sequences

>Glyma.17g260500.2 sequence-type=transcript locus=Glyma.17g260500 ID=Glyma.17g260500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAAGAAGAAAAGTATCGTGCGTTTAGCTTAGGAAGATGAGGCTGCATACTCTTGTGTGACCAAAAAGATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGATAATGACTTGCTCTTTTTTATATTGCCAGTTGTTGTCAGGATCTCTTTATTTCCTATATTTGCTGCTCATATTTCTGCATTCGAGAACTTCCATTACCATTTCCTTTTTGGAGCGCCAAGTTTTATTTTCTACACCAAAGTTATCTGTAAATCCTTTTGCCTTATTGAGATATTTACTGTTAATTACATTTACAGATCATGGCGACACCGAGTATTTGTTTCCTGTTCGGTGAACTATGTTTTGGGATTTGAGTAAACTAATCAATTATCTAGGACCGTGTTAGTGATTCAGTTCTAAAGTTTGACTATTG

Coding sequences of Glyma.17g260500

Limit To All Plant Sequences

>Glyma.17g260500.1 sequence-type=CDS polypeptide=Glyma.17g260500.1.p locus=Glyma.17g260500 ID=Glyma.17g260500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA

>Glyma.17g260500.2 sequence-type=CDS polypeptide=Glyma.17g260500.2.p locus=Glyma.17g260500 ID=Glyma.17g260500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA

Predicted protein sequences of Glyma.17g260500

Limit To All Plant Sequences

>Glyma.17g260500.1.p sequence-type=predicted peptide transcript=Glyma.17g260500.1 locus=Glyma.17g260500 ID=Glyma.17g260500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF*

>Glyma.17g260500.2.p sequence-type=predicted peptide transcript=Glyma.17g260500.2 locus=Glyma.17g260500 ID=Glyma.17g260500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain