Glyma.17g258200

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Report for Sequence Feature Glyma.17g258200

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41222782
stop:	41223797
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g258200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75750.1	AT	GAST1 protein homolog 1	JGI	N/A	IEA
PF02704	PFAM	Gibberellin regulated protein	JGI	N/A	IEA

Proteins Associated with Glyma.17g258200

Locus	Gene Symbol	Protein Name
	GASA29	gibberellin-regulated protein 29

Expression Patterns of Glyma.17g258200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g258200

Paralog	Evidence	Comments
Glyma.14g219100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g258200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g37760	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g258200

Limit To All Plant Sequences

>Glyma.17g258200.2 sequence-type=transcript locus=Glyma.17g258200 ID=Glyma.17g258200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACAACTCTTATCAACACTATAAATACCCTCCTCATTCTGCTTCTCATTCCACGCACTTAGCAATCAATCAAAACATTCCCAATAACAATAATATACACATCTTCAATTAAGCTCCTTCTCCTATAGCCATGGCTCTTTCTAAGCTTATAATTGCTTCCCTTCTTGCGTCGCTTCTCCTTCTTCATTTCGTTGATGCTGATCAATCGGTACATAAATATTCAAATATTCTGCTTCTTAATTTTTCCATATAAATATGCACATGCACAAACGCAGGGGTCTCTTCTTCAGCAGATAGATTGTAACGGAGCATGTGCTGCGAGGTGCCGTTTATCATCTCGTCCACGCCTCTGCCAAAGAGCTTGTGGAACTTGTTGTAGACGCTGTAACTGCGTGCCACCTGGCACTGCTGGAAACCAAGAAGTGTGTCCCTGCTATGCAAGTTTGACTACTCATGGTGGCAAACGCAAGTGCCCTTAGACTTAATTGGACCACTATCCTATGCATGCCTTTGATTTATATTATAAAATAAAAATAATACTATATATAACATGTTAATTGCTTAATATGTGCTTTAAGAGTAAAGAATAACATCGTGAAATCAAATTACCCCTTTTTCAATACGTGTTGAATCATCGATCTTGGTTTGTAATTTGGTTGTATATTCACAAAATTAATAAGTATATTGTGATGTGATTAATTCCCTTCTCTGTTATGGTGTACTTGCCTTCCCTGTATTGTCCATCTCCATCGTCTGTCTATTAATAAGAATTCTTATGTGATATTTTCATTTCATTTAT

Coding sequences of Glyma.17g258200

Limit To All Plant Sequences

>Glyma.17g258200.1 sequence-type=CDS polypeptide=Glyma.17g258200.1.p locus=Glyma.17g258200 ID=Glyma.17g258200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTTCTAAGCTTATAATTGCTTCCCTTCTTGCGTCGCTTCTCCTTCTTCATTTCGTTGATGCTGATCAATCGGCACATGCACAAACGCAGGGGTCTCTTCTTCAGCAGATAGATTGTAACGGAGCATGTGCTGCGAGGTGCCGTTTATCATCTCGTCCACGCCTCTGCCAAAGAGCTTGTGGAACTTGTTGTAGACGCTGTAACTGCGTGCCACCTGGCACTGCTGGAAACCAAGAAGTGTGTCCCTGCTATGCAAGTTTGACTACTCATGGTGGCAAACGCAAGTGCCCTTAG

>Glyma.17g258200.2 sequence-type=CDS polypeptide=Glyma.17g258200.2.p locus=Glyma.17g258200 ID=Glyma.17g258200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGATCAATCGGTACATAAATATTCAAATATTCTGCTTCTTAATTTTTCCATATAAATATGCACATGCACAAACGCAGGGGTCTCTTCTTCAGCAGATAGATTGTAACGGAGCATGTGCTGCGAGGTGCCGTTTATCATCTCGTCCACGCCTCTGCCAAAGAGCTTGTGGAACTTGTTGTAGACGCTGTAACTGCGTGCCACCTGGCACTGCTGGAAACCAAGAAGTGTGTCCCTGCTATGCAAGTTTGACTACTCATGGTGGCAAACGCAAGTGCCCTTAG

Predicted protein sequences of Glyma.17g258200

Limit To All Plant Sequences

>Glyma.17g258200.1.p sequence-type=predicted peptide transcript=Glyma.17g258200.1 locus=Glyma.17g258200 ID=Glyma.17g258200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSKLIIASLLASLLLLHFVDADQSAHAQTQGSLLQQIDCNGACAARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEVCPCYASLTTHGGKRKCP*

>Glyma.17g258200.2.p sequence-type=predicted peptide transcript=Glyma.17g258200.2 locus=Glyma.17g258200 ID=Glyma.17g258200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLINRYINIQIFCFLIFPYKYAHAQTQGSLLQQIDCNGACAARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEVCPCYASLTTHGGKRKCP*

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