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Report for Sequence Feature Glyma.17g257900

Feature Type:gene_model
Chromosome:Gm17
Start:41194169
stop:41196318
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g257900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47830.1AT SNARE-like superfamily protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
KOG0935 KOG Clathrin adaptor complex, small subunit JGI N/AIEA
PTHR11753Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI N/AIEA
PF01217PFAM Clathrin adaptor complex small chain JGI N/AIEA

Expression Patterns of Glyma.17g257900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g257900
ParalogEvidenceComments
Glyma.14g218900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g257900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g37730 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g257900
>Glyma.17g257900.2 sequence-type=transcript locus=Glyma.17g257900 ID=Glyma.17g257900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCATTACACGCTAGCAAAGCTGCAGCGCAAAAAGAAAATTAAATTAAAAATAAAAAAGAAAACAGAGATGTTGAAACTTGAAAGTAAAGTCGTTGGTAGGATCATCATCTCTTTGAGTTGCCATTGAAGAAGAAGCTCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGTTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGTTTGTTAATTCTCTCTTCTTGTTCCTATACCGTGTTTGTTTGTTTCTTGCATTTTACCATCAAATAATCATGGGATtgttgatgttgatgttgatgttgatgtACCATTGTACTGATCTTGATTTTTGCTGCATTTAGTCATGAGATTATTATAGTAGAATGTTGACAAACCATAGCCTGAACTAATCAATATGCTAGATTGTTTCTTTAGCTGGAAAATTTCAGTTTTGTTGCCACTTATTTAGCTACACTGATCAATATGAATCCCATCCACTGTATACAT
Coding sequences of Glyma.17g257900
>Glyma.17g257900.1 sequence-type=CDS polypeptide=Glyma.17g257900.1.p locus=Glyma.17g257900 ID=Glyma.17g257900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGTTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGA

>Glyma.17g257900.2 sequence-type=CDS polypeptide=Glyma.17g257900.2.p locus=Glyma.17g257900 ID=Glyma.17g257900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGTTCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGTTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGTTTGTTAA
Predicted protein sequences of Glyma.17g257900
>Glyma.17g257900.1.p sequence-type=predicted peptide transcript=Glyma.17g257900.1 locus=Glyma.17g257900 ID=Glyma.17g257900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE*

>Glyma.17g257900.2.p sequence-type=predicted peptide transcript=Glyma.17g257900.2 locus=Glyma.17g257900 ID=Glyma.17g257900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVC*






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