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Report for Sequence Feature Glyma.17g256500

Feature Type:gene_model
Chromosome:Gm17
Start:41032305
stop:41037627
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g256500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19850.1AT Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009725GO-bp response to hormone EnsemblGenomesN/AIEA
GO:0009725GO-bp response to hormone JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0042626GO-mf ATPase activity, coupled to transmembrane movement of substances EnsemblGenomesN/AIEA
PF02309PFAM AUX/IAA family JGI N/AIEA
PF02362PFAM B3 DNA binding domain JGI N/AIEA
PF06507PFAM Auxin response factor JGI N/AIEA

Expression Patterns of Glyma.17g256500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g256500
ParalogEvidenceComments
Glyma.14g217700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g256500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g37580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g256500
>Glyma.17g256500.1 sequence-type=CDS polypeptide=Glyma.17g256500.1.p locus=Glyma.17g256500 ID=Glyma.17g256500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGCTTCCGTTGAAGAAAAGATTAAAACTGGAGGAGTTGGAGGAGGAATGGTTGTTGGGGGTCAAACTCTTGTTGCTGAGATGAAACTGTTGAAAGAAATGCAAGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCACTACCCCAGGTTGGAAGCCTTGTGTTTTACTTCCCTCAGGGGCATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTTCAGAATGCCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTGCAACCACTGAATTCTGAAAGAGAAGTTTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCATGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAGCTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACCGGGGTCAACCAAAGAGACACCTGCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCACAATTGCGAGTTGGCGTGAGGCGTGTTAATCGTCAGCAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAATCTGTATTTGGAACTCAGGTCTCAGTTGGAATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGCTCTAAATGGCGCAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGATAAACAGAATAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAACAAGACCCTTCATAAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCAGAACACATGATGAAAATGCTTTTTAAACCCCAGCTGATTAACAATAATGGAGCATTTTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGAAATGAAGACCACTCTGGCAGCAGAAAACCAAATGCTGCTTAAAAATCTACATCCTCAATCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAATGATCAGCCTGAAAAATTTCATCCTCTTGCCAAAATTGATAATCATCTTCCTTCTGGGATAGTTATTGACAAGCCAAAATTAGAATGTGAGGTATTACCTGACCGCGTGATTGACTATCCTTCCATGGAAGGGTGCAACAATGAAAAGGTGGCAGTAAATCCTGTTAACCAGCAAGGCCTAGCAACCCAATTGCCATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCCAGTCCATGGCCTATGCAACCTCTGATAGAATCCTCCATGCCCCATCCTCAAATGATTGGTATGGCTCAAGCTGATTCTGCCATGGTAAATGGCCTGTTTCCTCAGCTTGACATTGATGAATGGTTGGCGTATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTTTCTGACTTGCAAGAACATAACTCACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTATGGGATCATTATGTCAAGAACTTCAAGTTCTTATCTCAAGCAGACCAGCTTACATCCATCTGTCAGCCAGGGATGTATGGCCTCAATGGCGTACCAAGCTCAAATAATTTGAGGGATCTTTCCGCTGAGAGCAATAACCAAAGTGAGATTTGTGTCAATGTTGATGCTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACGATGAAGGACGGAGAATTTCAGAATCCTCAAGATTGCATGGTTGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCTGCTAGTCTAGCCGAGTCACATGCCTATCCTCTTAGAGACATCCCTGACAACTCCGGTGGCACTTCATCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCATGGCAGCAAGTACCTGCACCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCCGTTGGAAGATCAATCGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATCGAATGCATGTTTGGACTCGATGGCCTGCTGAATGACACTAAAGGCTCAGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGTGATGATCCTTGGGAGGAATTTGTAGGCTGTGTCCGCTGCATAAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA
Predicted protein sequences of Glyma.17g256500
>Glyma.17g256500.1.p sequence-type=predicted peptide transcript=Glyma.17g256500.1 locus=Glyma.17g256500 ID=Glyma.17g256500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMASVEEKIKTGGVGGGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNATLHADKETDEIYAQMTLQPLNSEREVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLTRPFIRVPENGTMELSNSIPNLYSEHMMKMLFKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMLLKNLHPQSIPDQPNALNMQSLLKNDQPEKFHPLAKIDNHLPSGIVIDKPKLECEVLPDRVIDYPSMEGCNNEKVAVNPVNQQGLATQLPFHNQNQSPLLPQSSPWPMQPLIESSMPHPQMIGMAQADSAMVNGLFPQLDIDEWLAYASSQPFAGQNRPTGPFSDLQEHNSLQPQVVNPPLPSMNNEVWDHYVKNFKFLSQADQLTSICQPGMYGLNGVPSSNNLRDLSAESNNQSEICVNVDASNSVGTTMVDPSTSSTILDEFCTMKDGEFQNPQDCMVGNLSSSQDVQSQITSASLAESHAYPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV*






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