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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13430.1 | AT | isopropyl malate isomerase large subunit 1 | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0003861 | GO-mf | 3-isopropylmalate dehydratase activity | EnsemblGenomes | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | EnsemblGenomes | N/A | IEA |
| KOG0454 | KOG | 3-isopropylmalate dehydratase (aconitase superfamily) | JGI | N/A | IEA |
| PTHR11670 | Panther | ACONITASE | JGI | N/A | IEA |
| PTHR11670:SF16 | Panther | JGI | N/A | IEA | |
| PF00330 | PFAM | Aconitase family (aconitate hydratase) | JGI | N/A | IEA |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| LEUSYN-PWY | SoyCyc9 | L-leucine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-53723 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.17g256100 not represented in the dataset |
Glyma.17g256100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g217300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g37541 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g256100.1 sequence-type=CDS polypeptide=Glyma.17g256100.1.p locus=Glyma.17g256100 ID=Glyma.17g256100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCCTCTCTTCTCTCTCCATCATTCACTTCCTTCCCCCGCATAAAGAAGGATGTCTCTCTCTCTGCTTTCACTTCTCAGCGATGCTTCAAAGCGCTTCCAAGGAGAATAATCCGTTGTGCTGTGGCGGCGCCTCAGCGCCAACCTTCCACCACTGGATCAGTGAGGACTGCAATGACCATGACTGAGAAGATACTGGCCAGAGCTTCTGAGAAGGTACAGCTGACCCCTGGCGATAATGTTTGGGTCAATGTTGATATTTTGATGACACATGATGTGTGTGGCCCTGGTTCTATTGGGATTTTCAAGAGGGAGTTTGGTGACGATGCCAAGGTTTGGGACCGTGAAAAGCTTGTAATAATACCCGACCATTATATATTCACAAGTGATGAACGTGCCAATCGCAATGTAGACATATTAAGAGATTTCTGCCATGAGCAGAATATCAAGTACTTTTATGATATTAAGGATCTCAGTAATTTTAAGGTAAATCCAGACTATAAGGGTGTTTGCCATGTTGCCCTTGCTCAGGAAGGTCATTGTAGGCCTGGAGAGGTTCTCTTAGGTACTGATTCTCACACTTGTACTGCTGGAGCATTTGGCCAATTTGCTACAGGGATTGGTAATACTGATGCTGGCTTTGTGCTGGGAACTGGGAAACTTCTGCTTAAGGTGCCCCCAACTTTGAGATTTGTAATGGATGGAGAAATGCCTGATTATTTGCTTTCTAAGGATTTGATTCTGCAAATTATTGGTGAAATAACTGTGGCTGGTGCAACATATAAATCGATGGAGTTTGTCGGTACAACTGTTGAAAGTTTAACTATGGAAGAACGGATGACATTGTGCAACATGGTTGTTGAAGCTGGTGGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGATTTCTTGCTGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCCAAGCCTCATTCTCCAGATAATCGTGCTTTGGCAAGGGAGTGCAAGGATGTAAAAATTGACAGAGTATACATAGGATCTTGTACAGGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCAGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAAGGTTTGGATGGACTTATACTCCCTTCCAGTCCCTGGATCTGGTGGTAAGACGTGCTCCCAGATATTTGAAGAAGCTGGGTGTGACACACCAGCTAGTCCTAGTTGCGGTGCTTGTTTGGGTGGCCCGAAAGATACTTACGCACGCATGAATGAACCTAAGGCAAGGATTATTGTGGACAAGGAGTGGAAGAAGGATGTCGTGGATGTAAGAAGAGTAGGAGATCGTATCATAGCCTTAAAATTGGTAGTGGGACAGGACACCTTTAATGTTATTAGTGGGTACGCACCTCAGGTTGGGTTAGCAGAACACTTTAAGGTAAAATTTTGGGAGGATCTAAAAGGGGTACTTCAGGATATACCCCAAGGAGAGAAAGTTTTCCTAGGAGGGGATCTCAATGGACATGTAGGTAGCGTGGCTAGAGGTTTTGAGGGGGTGCATGGGGGTTTTGGCCTAGGGGAGATGAATGGGGAGGGTAAATCCATCTTGGAGTTTTCGGAGGCTTTGGATCTTTCTATAGCCAATACATGGTTTAAGAAAAGAGAGGACCATCTTATCACTTACAAAAGTGGAGGGACATGTTCTCAGATAGATTTCTTCCTTATCAGGAAGTCTGATAGGAAGTATTGCTTGAACTGTAAAGTTATCCCGGAAGAGAGCCTGACTACCCAACATAGAGTTTTGGTTATGGATGTAAGAATTAGAGATAGGGCAAAGAGAAGAAGTCCTATGGTAGCACCAAGGATCAAATGGTGGCACTTGAAGGGTGAGAAACAAGGAATCTTCCAACAAAAGATATGGGAGGGATGGTGTGGACAATCACAAGGAAGTGCAAATGATCTGTGGAACAAGATGTCCCAAGAGATTATTAAAGTGGCTAAAGAGACGTTGGGTGAATCTAGAGGTTTTGGACCTAGGGGTAAAGAATCGTGGTGGTGGAATGAAAGTGTTCAGAGCAAAGTTAGAGTAAAAAAGGAGTGTTTCAAGGAGTGGTCTAGGTGTAGAAATTCTGAAACTTGGGATAAGTATAAGATAGCTAGAAATGAAACCAAAAAGGCGGTGAGTGAGGCAAGAGCCCAAGCTTTTGACGGACTATACCAAGCTCTAGGAACCAGGGACGGAGAAAGATCTATATATAGGCTTGCTAAGGGTAGAGAGAGGAAGACTAGAGACCTGGATCAAGTAAAGTGTGTTAAGGATGAAGAAGGCAAAGTCTTAGTGCATGAAAAAGATATCAAGGAAAGGTGGAAGGCGTATTTCCACAACTTATTTAATGATGGATATGGATATGACTCTAGCAGTCTAGACACAAGAGAAGAGGACCGGAACTATAAGTACTATCGTCGGATTCAGAAACAGGAAGTAAAGGAAGCGTTGAAAAGAATGAGTAACGGTAAGGCGGTGGGGCCAGACAACATACCTATTGAAGTGTGGAAAACTCTTGGAGATAGAGGTCTTGAGTGGCTCACCAAACTCTTTAATGAAATTATGAGGTCAAAACGCATGCCGGAGGAATGGAGGAGAAGCACGTTAGTTTGTGTTTCAACTACGAACAGGAACTTCCCGGGCCGAATGGGACACAAGGAAGGTCAAATCTATTTGGCTTCCCCATATACAGCTGCTGCATCTGCATTGACCGGTTATGTTACTGATCCTAGAGAGTTCTTGCAGTAG
>Glyma.17g256100.1.p sequence-type=predicted peptide transcript=Glyma.17g256100.1 locus=Glyma.17g256100 ID=Glyma.17g256100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSLLSPSFTSFPRIKKDVSLSAFTSQRCFKALPRRIIRCAVAAPQRQPSTTGSVRTAMTMTEKILARASEKVQLTPGDNVWVNVDILMTHDVCGPGSIGIFKREFGDDAKVWDREKLVIIPDHYIFTSDERANRNVDILRDFCHEQNIKYFYDIKDLSNFKVNPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLSKDLILQIIGEITVAGATYKSMEFVGTTVESLTMEERMTLCNMVVEAGGKNGVVPADSTTFKYLEGKTSLPYEPVYSDDQARFLAEYRFDVSKLEPVVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKQVKVPTFLVPATQKVWMDLYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPKARIIVDKEWKKDVVDVRRVGDRIIALKLVVGQDTFNVISGYAPQVGLAEHFKVKFWEDLKGVLQDIPQGEKVFLGGDLNGHVGSVARGFEGVHGGFGLGEMNGEGKSILEFSEALDLSIANTWFKKREDHLITYKSGGTCSQIDFFLIRKSDRKYCLNCKVIPEESLTTQHRVLVMDVRIRDRAKRRSPMVAPRIKWWHLKGEKQGIFQQKIWEGWCGQSQGSANDLWNKMSQEIIKVAKETLGESRGFGPRGKESWWWNESVQSKVRVKKECFKEWSRCRNSETWDKYKIARNETKKAVSEARAQAFDGLYQALGTRDGERSIYRLAKGRERKTRDLDQVKCVKDEEGKVLVHEKDIKERWKAYFHNLFNDGYGYDSSSLDTREEDRNYKYYRRIQKQEVKEALKRMSNGKAVGPDNIPIEVWKTLGDRGLEWLTKLFNEIMRSKRMPEEWRRSTLVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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