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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G06060.1 | AT | LisH and RanBPM domains containing protein | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
KOG2659 | KOG | LisH motif-containing protein | JGI | N/A | IEA |
PTHR12864 | Panther | RAN BINDING PROTEIN 9-RELATED | JGI | N/A | IEA |
PF10607 | PFAM | CTLH/CRA C-terminal to LisH motif domain | JGI | N/A | IEA |
Glyma.17g254300 not represented in the dataset |
Glyma.17g254300 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.14g070300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma17g37300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g254300.2 sequence-type=transcript locus=Glyma.17g254300 ID=Glyma.17g254300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTCAGTTCCATACTTCTATTCCATTGGTACCCTTTTCTTTCTGCAGCTtatatatatatatatatatatatatatataGACGTGTAGTAATATAGTTAGTAATAACCAATTACAATACCCTTTTCTTTCTTTTGTGTTTCTTGCTTTCTTCTTCTTCGCTTTCGTCCCTTTTCGGAGTATCCCTCCCAACCATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTT >Glyma.17g254300.3 sequence-type=transcript locus=Glyma.17g254300 ID=Glyma.17g254300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTCAGTTCCATACTTCTATTCCATTGGTACCCTTTTCTTTCTGCAGCTtatatatatatatatatatatatatatataGACGTGTAGTAATATAGTTAGTAATAACCAATTACAATACCCTTTTCTTTCTTTTGTGTTTCTTGCTTTCTTCTTCTTCGCTTTCGTCCCTTTTCGGAGTATCCCTCCCAACCATGGACGTTGATCCTTGCCAATACGAACAAATTGTACGTTTCTTTTGCTTCTCCTTTACCTAATATTGCGCTTCCATTCCCCTTTTCTATTTCACTCTACTCTTCTTTCTTCGTTATATTTATATTGATGATTCTGGCTTCTCCTTTTGCAGCAAAGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTT >Glyma.17g254300.4 sequence-type=transcript locus=Glyma.17g254300 ID=Glyma.17g254300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTCAGTTCCATACTTCTATTCCATTGGTACCCTTTTCTTTCTGCAGCTtatatatatatatatatatatatatatataGACGTGTAGTAATATAGTTAGTAATAACCAATTACAATACCCTTTTCTTTCTTTTGTGTTTCTTGCTTTCTTCTTCTTCGCTTTCGTCCCTTTTCGGAGTATCCCTCCCAACCATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAAGGATGCTGGGGATTGCTTCCTAAATCTAAATTGTTTGTAATTGGAGCATATTATAGGTAGTAAGGCCTCCTTGATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTT >Glyma.17g254300.5 sequence-type=transcript locus=Glyma.17g254300 ID=Glyma.17g254300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 CCCTGCTTAGTTGTCACTGTTGAGAGATTTGTATCATATAAACATGAGCATTGGATTACTGGACCTCAAATTGAAGGGTGCTGAATCAATTTTTGCTCTTAATGCCACTTGAAACATCTAATTGGGTTTTTGACAATGTTGTCTGAGTTTTGTCAAATATACTGTTTTCTTGCATACCTTTGAACTGACATATCTTGTTGCCTTCTCTTGACTTTTTAATATTTCTCCCCTCCTCTCCACTTGCAGAGGATGCTGGGGATTGCTTCCTAAATCTAAATTGTTTGTAATTGGAGCATATTATAGGTAGTAAGGCCTCCTTGATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTT
>Glyma.17g254300.1 sequence-type=CDS polypeptide=Glyma.17g254300.1.p locus=Glyma.17g254300 ID=Glyma.17g254300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAG >Glyma.17g254300.2 sequence-type=CDS polypeptide=Glyma.17g254300.2.p locus=Glyma.17g254300 ID=Glyma.17g254300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGA >Glyma.17g254300.3 sequence-type=CDS polypeptide=Glyma.17g254300.3.p locus=Glyma.17g254300 ID=Glyma.17g254300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGA >Glyma.17g254300.4 sequence-type=CDS polypeptide=Glyma.17g254300.4.p locus=Glyma.17g254300 ID=Glyma.17g254300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGA >Glyma.17g254300.5 sequence-type=CDS polypeptide=Glyma.17g254300.5.p locus=Glyma.17g254300 ID=Glyma.17g254300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAG
>Glyma.17g254300.1.p sequence-type=predicted peptide transcript=Glyma.17g254300.1 locus=Glyma.17g254300 ID=Glyma.17g254300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDVDPCQYEQIAINEKDVNNIILSYLIHNCYKESSESFISCTGMKQPADHLENMEKRKRIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILGWLTSLYSVYLIYILLQISILCSIPAKYDLQSLSFCLFFSVDVGDGQHTLTFPSTLPWSGLYNRPQ* >Glyma.17g254300.2.p sequence-type=predicted peptide transcript=Glyma.17g254300.2 locus=Glyma.17g254300 ID=Glyma.17g254300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDVDPCQYEQIAINEKDVNNIILSYLIHNCYKESSESFISCTGMKQPADHLENMEKRKRIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSLEDGGPPPFSLKDILKSQ* >Glyma.17g254300.3.p sequence-type=predicted peptide transcript=Glyma.17g254300.3 locus=Glyma.17g254300 ID=Glyma.17g254300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKQPADHLENMEKRKRIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSLEDGGPPPFSLKDILKSQ* >Glyma.17g254300.4.p sequence-type=predicted peptide transcript=Glyma.17g254300.4 locus=Glyma.17g254300 ID=Glyma.17g254300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDKFHSSLGIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSLEDGGPPPFSLKDILKSQ* >Glyma.17g254300.5.p sequence-type=predicted peptide transcript=Glyma.17g254300.5 locus=Glyma.17g254300 ID=Glyma.17g254300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDKFHSSLGIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILGWLTSLYSVYLIYILLQISILCSIPAKYDLQSLSFCLFFSVDVGDGQHTLTFPSTLPWSGLYNRPQ*
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