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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75200.1 | AT | flavodoxin family protein / radical SAM domain-containing protein | JGI | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0010181 | GO-mf | FMN binding | EnsemblGenomes | N/A | IEA |
| GO:0010181 | GO-mf | FMN binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG1160 | KOG | Fe-S oxidoreductase | JGI | N/A | IEA |
| PTHR13930 | Panther | RSAFD1-RELATED | JGI | N/A | IEA |
| PF00258 | PFAM | Flavodoxin | JGI | N/A | IEA |
| PF04055 | PFAM | Radical SAM superfamily | JGI | N/A | IEA |
| PF08608 | PFAM | Wyosine base formation | JGI | N/A | IEA |
| GN7V-65965 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.17g250400 not represented in the dataset |
Glyma.17g250400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g075000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
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>Glyma.17g250400.1 sequence-type=CDS polypeptide=Glyma.17g250400.1.p locus=Glyma.17g250400 ID=Glyma.17g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGATATCAATATCCTTATCCTCAGTTCCCGCGCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTACTGTCTCTACAAGTCTCGCCGCTTAAGACACCTTAAACTCTCCCTAAACCCTAACCCTAACCCTAACCCTAACCCTAAGATTCTCTTCCTCTCCGAAACAGGCACCGCCAAAACCCTCGCGCGTCGCCTCCACCGGCTCCTTTCCTCCAACGATGTCGCATTCGACCTCGTCGATGCGCAGCACTACGAGCCCGAGGACCTCCCCAAGGAGACGCTCATCCTCCTCGTCGCCTCCACGTGGCAGGACGGCGCTGCCCCCGCCGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGACGCCGCCGCCGACTTCCGCGCCGGCTCCCTTCTCCTCTCCCGCTGCCGCTTCGCCGTCTTCGGCGTCGGGAGCCGGGCCTACGGTGACGACTCCTTCAACGCCGTCGCGAAGGGCCTCGCCATGCACCTGAGGGCACTCGGCGCGACGGAGGCCGTTCCCCTGTCCGAAGGGGACATCGACGGTGGCGATGACGTGGACGCGGTTTTCGATCGGTGGTGTGAGAAGGTGGTGGCGGTTTTGAAAGGCGTTGGTGTTGTGGAAAGCTGTGATAATGATGGTGCTGAGGAATGCGGCGTGGTTTCGAGTTCTGAAGAGGAGTCTGATGTGGAAAGTAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGCGGCGGAAGGTGGTGGCTAATGGGGAAGAGAGCAATGGGAAGTTGAATGGCAGTAGAGAAATGGTCACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATTATTGGGTCGCATAGTGGTGTCAAGCTTTGTAGATGGACCAAGGCGCAGCTTCGAGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATTGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCTTGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTTGGGAAAAGTTGGCAGTGGCAGATGGATGATCCAATAGAGATTGTAAATTCTGCAATAGACCTGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTTACCTTGGAGCGATTATCTGAAGGTCTCTCACCACGTCATTGTGCATTATCGCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCACTGAAACCTATCACCCAGTTATATGTAAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGGAAAAACATCAGCGAACAGTATACCGCCTGACCCTGGTGAAAGGCTGGAATACCGAAGAAGTTGATGCTTATTCTAAGCTCTTTAGTTTAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCACTACGTCAAAATTGACAATGGATAATGTCCCTTGGCATGCTGATGTGAAAGCTTTTTCTGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTGTCCTCTTAGCAAAAACTAATAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAGAACTTTTGACAGCAGAGATTACATGGCTGCCACACCATCGTGGTCCGTCTATGGATCAGAGGAAGGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACATCACAAGTCTACCCGCAATCAAGCAGGTTAG
>Glyma.17g250400.1.p sequence-type=predicted peptide transcript=Glyma.17g250400.1 locus=Glyma.17g250400 ID=Glyma.17g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSISISLSSVPARLTLLALFSATTFYCLYKSRRLRHLKLSLNPNPNPNPNPKILFLSETGTAKTLARRLHRLLSSNDVAFDLVDAQHYEPEDLPKETLILLVASTWQDGAAPAASRFFATWLADAAADFRAGSLLLSRCRFAVFGVGSRAYGDDSFNAVAKGLAMHLRALGATEAVPLSEGDIDGGDDVDAVFDRWCEKVVAVLKGVGVVESCDNDGAEECGVVSSSEEESDVESSEIVDLEDIAGKAPSRRKVVANGEESNGKLNGSREMVTPVIRANLEKQGYKIIGSHSGVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHTNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEEVDAYSKLFSLGEPDFVEIKGVTYCGSSTTSKLTMDNVPWHADVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFHDLVASGRTFDSRDYMAATPSWSVYGSEEGGFDPGQLRYRKERHHKSTRNQAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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