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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19340.1 | AT | Methyltransferase MT-A70 family protein | JGI | N/A | IEA |
| GO:0006139 | GO-bp | nucleobase-containing compound metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006139 | GO-bp | nucleobase-containing compound metabolic process | JGI | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0032775 | GO-bp | DNA methylation on adenine | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0009007 | GO-mf | site-specific DNA-methyltransferase (adenine-specific) activity | EnsemblGenomes | N/A | IEA |
| KOG2356 | KOG | Transcriptional activator, adenine-specific DNA methyltransferase | JGI | N/A | IEA |
| PTHR14475 | Panther | DROSOPHILA MELANOGASTER BITHORAX COMPLEX (BX-C)-RELATED | JGI | N/A | IEA |
| PTHR14475:SF2 | Panther | METHYLTRANSFERASE-LIKE PROTEIN 4 | JGI | N/A | IEA |
| PF05063 | PFAM | MT-A70 | JGI | N/A | IEA |
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Glyma.17g248800 not represented in the dataset |
Glyma.17g248800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g077000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g36721 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g248800.1 sequence-type=CDS polypeptide=Glyma.17g248800.1.p locus=Glyma.17g248800 ID=Glyma.17g248800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACCCCGTCCACGTTCTCAATCGTTCCTACCTCCGCGTCACCGTTTCTCCTTCTAGCTACTATTCCCGTTTTTTCAAATCCTCCTCAACAACCCCCAACTCCGTCACCACCGTTACTTCCCCTCTCACGACACAGAAACGGAAAGAGCCTCGAGCTTTGAAATCAACTGAACTGTTGAATGCTTTGAAAGCTTTGAAGAGTGGATCGCGTTGCTCGAAGAGGGAGTGTGAGGGTGGTCAACACTCTTTCGTTGACCTGGTACAGGTGGCGCCTCAACTTGAGATTCGCCTAGTGTGCAATGCTGCGGTGCTCCCTGCATTCAATAATTTGGTTGCTAATGACACCAAGGATGACGCGGTGGCTGAAATTTTGAACAATCGTTATATAATGCCCCAGGAGAGTTGCTTTTACATGTCTGATCTGGGACAGATTCGCAATCTAATTCCTGCTCTTACTGATTCTGGTTTCAACCTCATAGTGGTGGATCCACCTCAGGAAAATTCCAGTGCCCACCGGAAATCAAGATACATTTCTCTCCAATTAATCTATGAGGAGGTTGAAACTTGTTATTTATTCTGTCTAGGTTTTTCACCCTGGGGGGTACGCAACCTTGCCCAACTGGTTTTTTTATCCCTTCCTATTAAGCAACTCACTCACACCGAAGGAGCGCTTGTAGCCTTATGGGTGACCAACAGAGAGAAGCTACGTTGTTTTGTGAAAAAAAATGGATCCTGGATTTGTGATTTAGATCTCTTCCATCATAGGCCATATGAATGCCTTATCTTGGGATATAGTCCTAGGAAGGTGAATAATACTGACAACCAATCAAAATTTAAACCTGTGAATAATGATCATGTGATTATGAGCATTCCTGGGGATTACTCAAGGAAACCTCCAATTGCAGATTTATTACTGGAGTACGTTCCTGGGTTCAAACCTTCTCGATGTATAGAGCTATTTGCTAGAGAAATTATGGCTGGATGGGTTGCTTGGGGGAATGAACCCCTCTACTTTCAAGATTCTAAATATTTTGTCAAAAAGATAGACCAATGA
>Glyma.17g248800.1.p sequence-type=predicted peptide transcript=Glyma.17g248800.1 locus=Glyma.17g248800 ID=Glyma.17g248800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDPVHVLNRSYLRVTVSPSSYYSRFFKSSSTTPNSVTTVTSPLTTQKRKEPRALKSTELLNALKALKSGSRCSKRECEGGQHSFVDLVQVAPQLEIRLVCNAAVLPAFNNLVANDTKDDAVAEILNNRYIMPQESCFYMSDLGQIRNLIPALTDSGFNLIVVDPPQENSSAHRKSRYISLQLIYEEVETCYLFCLGFSPWGVRNLAQLVFLSLPIKQLTHTEGALVALWVTNREKLRCFVKKNGSWICDLDLFHHRPYECLILGYSPRKVNNTDNQSKFKPVNNDHVIMSIPGDYSRKPPIADLLLEYVPGFKPSRCIELFAREIMAGWVAWGNEPLYFQDSKYFVKKIDQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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