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Report for Sequence Feature Glyma.17g248600

Feature Type:gene_model
Chromosome:Gm17
Start:40383681
stop:40387113
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g248600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42610.1AT Protein of unknown function (DUF607) JGI N/AIEA
GO:0051560GO-bp mitochondrial calcium ion homeostasis EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015292GO-mf uniporter activity EnsemblGenomesN/AIEA
KOG2966 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR13462Panther FAMILY NOT NAMED JGI N/AIEA
PTHR13462:SF4Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF04678PFAM Protein of unknown function, DUF607 JGI N/AIEA

Expression Patterns of Glyma.17g248600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g248600
ParalogEvidenceComments
Glyma.14g077100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g248600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g36700 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g248600
>Glyma.17g248600.1 sequence-type=CDS polypeptide=Glyma.17g248600.1.p locus=Glyma.17g248600 ID=Glyma.17g248600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCTTCAGAAACTGTTATCGAAGCATTTCTTTGACGGTGTCAAAATGAGGCCGTTTGAACGCAGTGTCGTGTCGTCTCCAACTATGCAACAACAAGTCATCGCGCCTCCGAGCATGCTGGGAGTGAGTTCGGCAGACGGAGGATTTCTCCGGCGGTTTTTCCTCCTCCGGCAAGCGGTGTACCACTCCAGTCCGGCACGTTTCCCGGATTTCCTGTCTCTCCCCGTCGGAGAGAAGCTCCGGGAGAAACTCAAAAGCATCAACAACATAGCCGGCATAGGAGACTGTTGTGTTGCTCTCGCTCCGGCACCTATGGCCAGCGATGCGGTGTTTGGAAGTGGAATGTCTGTCAGCCACGCGAGGAAGATTTTGAGGGTGCCGCAAATGGAGAAGGTGAAGGCAAAGCTGAGAAACGTTTCGGAGAGTTCGGTTCCGTACTCGGAGTTTTTGCGGATCTGCGTTGAGACGTGTGAGAATCATGAGCAAGGGGCTGAGTTTGCAAAGATCTTGGATGAATCCGGAAACGTCATCGTTTTGGGGAAAGCAGTTTTTCTCCGGCCAGAGGAGGTGGCAAAATCAATAGAGAGCTTAATCTATCAATCAATAGCCAATCCAAATGACCCTAGAAGGAAGGAGCTAGAGCTGATGGAGAAGCAAAAGTGGATGATTGATGAAAAGGCCAAGGCCCAGGTCCGAGCTGAGCTTTATTTTGGGCTGGGCTTCTTGACAGTCCAGACCCTCGGGTTCATGAGGCTCACTTTCTGGGAACTAAGCTGGGATGTGATGGAGCCCATATGCTTCTTTGTTACCTCATTCGGCTTCGCTCTTGCTTATCTTTTCTTCCTCAAGACCTCCACAGAACCCACCTTTCAGGGCTTCTTCCATCACCGGTTTAAGGCCAAGCAAGAGCGTCTCATGAAGACACACAACTTTGACATGAGTAGGTACAACGAGTTATTTAAGGCATGCTATACAAATTATCATGGTGGTGCCAAATTTGAATCTTCTTATCCCTTCCACTACCCTGGGGAGACACATCTAACTGATCTAAGAGCCTTGCATCGTTGA
Predicted protein sequences of Glyma.17g248600
>Glyma.17g248600.1.p sequence-type=predicted peptide transcript=Glyma.17g248600.1 locus=Glyma.17g248600 ID=Glyma.17g248600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLQKLLSKHFFDGVKMRPFERSVVSSPTMQQQVIAPPSMLGVSSADGGFLRRFFLLRQAVYHSSPARFPDFLSLPVGEKLREKLKSINNIAGIGDCCVALAPAPMASDAVFGSGMSVSHARKILRVPQMEKVKAKLRNVSESSVPYSEFLRICVETCENHEQGAEFAKILDESGNVIVLGKAVFLRPEEVAKSIESLIYQSIANPNDPRRKELELMEKQKWMIDEKAKAQVRAELYFGLGFLTVQTLGFMRLTFWELSWDVMEPICFFVTSFGFALAYLFFLKTSTEPTFQGFFHHRFKAKQERLMKTHNFDMSRYNELFKACYTNYHGGAKFESSYPFHYPGETHLTDLRALHR*






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