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Report for Sequence Feature Glyma.17g247300

Feature Type:gene_model
Chromosome:Gm17
Start:40277340
stop:40280463
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g247300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74970.1AT ribosomal protein S9 JGI N/AIEA
GO:0000462GO-bp maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0000312GO-cc plastid small ribosomal subunit EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG1697 KOG Mitochondrial/chloroplast ribosomal protein S9 JGI N/AIEA
PTHR21569Panther RIBOSOMAL PROTEIN S9 JGI N/AIEA
PF00380PFAM Ribosomal protein S9/S16 JGI N/AIEA

Expression Patterns of Glyma.17g247300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g247300 not represented in the dataset
Glyma.17g247300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g247300
ParalogEvidenceComments
Glyma.14g078100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g247300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g36580 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g247300
>Glyma.17g247300.2 sequence-type=transcript locus=Glyma.17g247300 ID=Glyma.17g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATCCTTACGTAGTGTACACTATCCAGTGGAGCTTGAATTTGCCAAGGCACCGAGGCAGTGGAAGGAAGACAATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGAGTTGTAGGTTTTTCGGGTTAGGAAAAGTAAAGAGAAATTGAAAAATATCCGAAGGCGTATGTATTCAGAATCCTGCTCCCTGTTTTCCCATCTCTTGTTTCCTTGATCTGTATGGAATTGGGAATTTTAGGTATGTAATATTTGTCTCTCCCTTTTACCCCCAACCAAAATCACATGTTTTACTATATTGCAGGTTTCTTTTCAAGACCTAAATTTTGTGGTCTTTTACTCTTCATTTCTTGTGCCTGTTTGTACCTTCATTTGGCATATTGAAATATTTGAAACAATGACATGTGAAATTTCTTACTATCTCAATTTTGATCGGTTGTGAAACATAGAC

>Glyma.17g247300.3 sequence-type=transcript locus=Glyma.17g247300 ID=Glyma.17g247300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATCCTTACGTAGTGTACACTATCCAGTGGAGCTTGAATTTGCCAAGGCACCGAGGCAGTGGAAGGAAGACAATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGAGGTTGGGATGTTACATGTTTTTCGGGTTAGGAAAAGTAAAGAGAAATTGAAAAATATCCGAAGGCGTATGTATTCAGAATCCTGCTCCCTGTTTTCCCATCTCTTGTTTCCTTGATCTGTATGGAATTGGGAATTTTAGGTATGTAATATTTGTCTCTCCCTTTTACCCCCAACCAAAATCACATGTTTTACTATATTGCAGGTTTCTTTTCAAGACCTAAATTTTGTGGTCTTTTACTCTTCATTTCTTGTGCCTGTTTGTACCTTCATTTGGCATATTGAAATATTTGAAACAATGACATGTGAAATTTCTTACTATCTCAATTTTGATCGGTTGTGAAACATAGAC

>Glyma.17g247300.4 sequence-type=transcript locus=Glyma.17g247300 ID=Glyma.17g247300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATCCTTACGTAGTGTACACTATCCAGTGGAGCTTGAATTTGCCAAGGCACCGAGGCAGTGGAAGGAAGACAATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGAGGTTGGGATGTTACATTTGTAGGTTTTTCGGGTTAGGAAAAGTAAAGAGAAATTGAAAAATATCCGAAGGCGTATGTATTCAGAATCCTGCTCCCTGTTTTCCCATCTCTTGTTTCCTTGATCTGTATGGAATTGGGAATTTTAGGTATGTAATATTTGTCTCTCCCTTTTACCCCCAACCAAAATCACATGTTTTACTATATTGCAGGTTTCTTTTCAAGACCTAAATTTTGTGGTCTTTTACTCTTCATTTCTTGTGCCTGTTTGTACCTTCATTTGGCATATTGAAATATTTGAAACAATGACATGTGAAATTTCTTACTATCTCAATTTTGATCGGTTGTGAAACATAGAC
Coding sequences of Glyma.17g247300
>Glyma.17g247300.1 sequence-type=CDS polypeptide=Glyma.17g247300.1.p locus=Glyma.17g247300 ID=Glyma.17g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA

>Glyma.17g247300.2 sequence-type=CDS polypeptide=Glyma.17g247300.2.p locus=Glyma.17g247300 ID=Glyma.17g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA

>Glyma.17g247300.3 sequence-type=CDS polypeptide=Glyma.17g247300.3.p locus=Glyma.17g247300 ID=Glyma.17g247300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA

>Glyma.17g247300.4 sequence-type=CDS polypeptide=Glyma.17g247300.4.p locus=Glyma.17g247300 ID=Glyma.17g247300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA
Predicted protein sequences of Glyma.17g247300
>Glyma.17g247300.1.p sequence-type=predicted peptide transcript=Glyma.17g247300.1 locus=Glyma.17g247300 ID=Glyma.17g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*

>Glyma.17g247300.2.p sequence-type=predicted peptide transcript=Glyma.17g247300.2 locus=Glyma.17g247300 ID=Glyma.17g247300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*

>Glyma.17g247300.3.p sequence-type=predicted peptide transcript=Glyma.17g247300.3 locus=Glyma.17g247300 ID=Glyma.17g247300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*

>Glyma.17g247300.4.p sequence-type=predicted peptide transcript=Glyma.17g247300.4 locus=Glyma.17g247300 ID=Glyma.17g247300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*






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