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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42650.1 | AT | allene oxide synthase | JGI | N/A | IEA |
| GO:0006952 | GO-bp | defense response | EnsemblGenomes | N/A | IEA |
| GO:0009695 | GO-bp | jasmonic acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016125 | GO-bp | sterol metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009535 | GO-cc | chloroplast thylakoid membrane | EnsemblGenomes | N/A | IEA |
| GO:0009941 | GO-cc | chloroplast envelope | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | JGI | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PF00067 | PFAM | Cytochrome P450 | JGI | N/A | IEA |
| PWY-735 | SoyCyc9 | jasmonic acid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-57352 | SoyCyc9-rxn | hydroperoxide dehydratase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| AOS2 | allene oxide synthase |
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Glyma.17g246500 not represented in the dataset |
Glyma.17g246500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g078600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g36530 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g246500.1 sequence-type=CDS polypeptide=Glyma.17g246500.1.p locus=Glyma.17g246500 ID=Glyma.17g246500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCCTCAGCCTCGACCACGCTGTCTTCTCCCTTCCTGCGACTAGAATTCCCCTCCTCAACCAAACAACGCTCTTCAATCTCCATCAGAGCCTCGGTCTCCGAGAAACCCCCGCTACCGGCTGTGTCGGTGACCTCCCCGGAGCCCAGCAAGCTTCCGATCCGCAAAATCCCCGGCGACTGCGGGTTCCCGGTGATCGGTCCCTTCAAGGACCGCCAAGACTATTTCTACAAGCAAGGGCGCGACGAGTTCTTCAAGTCCCGCATCCAAAAGTACCAGTCAACGGTCTTCCGCACCAACATGCCCCCTGGCCCCTTCCTCGCCCCCGACCCAAACGTCGTCGTTCTCCTCGATGCCAAAAGTTTCCCCGTCCTCTTCGACAACTCTAAGGTCGAGAAAAAAGACGTCTTCACTGGAACCTTCATGCCTTCCACCGAACTCACCGGCGGTTACCGAGTCCTTTCTTACCTCGACCCCTCCGAACCCAAACACGCCCTCCTCAAACAACTCATGTTCTTCCTCCTCAAATCACGTCGCGCCCACGTCATCTCTGAGTTCCACGCGTCCTACAAAGAACTCTTCCACGCCCTCGAAGCCAACCTCGCCGAAGCCGGCAAAGCCAGCTTCGGCGATGCCAACGACCAAGCCGCCTTCAACTTTTTATCACGCTCCCTCTTCAACTCCAACCCCGCCGATACCAAACTGGGCCTCGACGGCCCAAAAATCGTTCAGAAATGGGTTCTCTTTCAGATCGGCCCAATTCTCCGATTGGGCCTCCCTCAATTCTTAGAAGAATCCACCATCCGAACCTTCCGTCTCCCGTTCTCTCTGATAAAAAAAGATTACCAGAGACTATACGATTTCTTCTACGAGTCTTCCGGTCTAGTATTAGACGAAGCGGAGCGATTGGGGATCACGCGCGATGAGGCTTGCCATAATCTGTTGTTCGCCACCTGCTTTAACTCCTTCGGCGGGATGAAGCTTTTTTTCCCGAACGTGTTGAAGTGGATCGGACGCGCCGGGGTGAAGCTCCACGCGCGGCTGGCGGAGGAGATTCGCTCCGCCGTGAGAAGCGGCGGCGGGGAGATCAGCATGGCGGCGATGGAGAAGATGCCGCTGATGAAATCCGTGGTGTACGAGGCGTTCCGAATCGACCCGCCGGTGGCGCTGCAGTTCGGGAGGGCGAAGAGAGACTTGATCATTGAGAGCCACGACCACGCGTTTCAGGTGAAGGAAGGGGAGATGCTGTTCGGGTACCAACCATTCGCGACGAAGGATCCTAGGATCTTCGAGAGGGCCGAGGAGTTTGTCGGGGACAGGTTCGTCGGGGAGGAAGGGGAGAAGCTCCTCAAGCACGTGCTGTGGTCCAATGGGCCTGAGACTGAGTCTCCAACACTTGGGAACAAGCAATGCGCCGGAAAAGACTTCGTCACCTTGGTTTCGAGGCTTTTCGTTGTGGAGTTCTTTCTTCGCTATGATTCCTTCGAGATTCAAGTGGGAACTTCTCCCTTGGGTTCTTCCGTTACTATTACTTCCCTAAAGAGAGCAAGCTTTTAG
>Glyma.17g246500.1.p sequence-type=predicted peptide transcript=Glyma.17g246500.1 locus=Glyma.17g246500 ID=Glyma.17g246500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSASTTLSSPFLRLEFPSSTKQRSSISIRASVSEKPPLPAVSVTSPEPSKLPIRKIPGDCGFPVIGPFKDRQDYFYKQGRDEFFKSRIQKYQSTVFRTNMPPGPFLAPDPNVVVLLDAKSFPVLFDNSKVEKKDVFTGTFMPSTELTGGYRVLSYLDPSEPKHALLKQLMFFLLKSRRAHVISEFHASYKELFHALEANLAEAGKASFGDANDQAAFNFLSRSLFNSNPADTKLGLDGPKIVQKWVLFQIGPILRLGLPQFLEESTIRTFRLPFSLIKKDYQRLYDFFYESSGLVLDEAERLGITRDEACHNLLFATCFNSFGGMKLFFPNVLKWIGRAGVKLHARLAEEIRSAVRSGGGEISMAAMEKMPLMKSVVYEAFRIDPPVALQFGRAKRDLIIESHDHAFQVKEGEMLFGYQPFATKDPRIFERAEEFVGDRFVGEEGEKLLKHVLWSNGPETESPTLGNKQCAGKDFVTLVSRLFVVEFFLRYDSFEIQVGTSPLGSSVTITSLKRASF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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