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Report for Sequence Feature Glyma.17g243800

Feature Type:gene_model
Chromosome:Gm17
Start:39937926
stop:39942263
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g243800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23540.1AT Mov34/MPN/PAD-1 family protein JGI N/AIEA
GO:0070536GO-bp protein K63-linked deubiquitination EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0061578GO-mf Lys63-specific deubiquitinase activity EnsemblGenomesN/AIEA
KOG1555 KOG 26S proteasome regulatory complex, subunit RPN11 JGI N/AIEA
PTHR10410Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED JGI N/AIEA
PTHR10410:SF5Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 JGI N/AIEA
PF01398PFAM JAB1/Mov34/MPN/PAD-1 ubiquitin protease JGI N/AIEA

Expression Patterns of Glyma.17g243800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g243800
ParalogEvidenceComments
Glyma.14g081600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g243800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g36230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g243800
>Glyma.17g243800.1 sequence-type=CDS polypeptide=Glyma.17g243800.1.p locus=Glyma.17g243800 ID=Glyma.17g243800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGGCATGGAGAGGCTTCAGAGGATGTTCGCTGGTGCAGGTGGAGCGCTGGGTCATCCCCCACCGGATTCTCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTTCTCAAAATGCTCAAACACGGAAGAGCTGGAGTACCGATGGAAGTGATGGGTCTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTGTTTGCGATGCCTCAGAGTGGGACCGGTGTTAGCGTTGAAGCTGTTGATCATGTTTTTCAGACTAATATGCTTGATATGTTGAAGCAGACTGGAAGGCCGGAGATGGTTGTGGGGTGGTATCACTCGCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGACATTAATACACAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGACCCTATTCAGAGTGTTAAAGGCAAAGTGGTAATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAGGAACCACGACAGACAACTTCCAACCTGGGCCACCTAAACAAGCCATCTATCCAAGCTCTGATCCATGGCTTGAATAGACATTATTACTCGATAGCGATTAATTACAGAAAGAATGAACTTGAAGAGAAGATGTTACTTAACCTTCACAAAAAGAAGTGGACTGATGGTTTGACACTCAGGCATTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAAATGCTAAGTTTAGCAGCCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAGCTGCCGCCAGAAAAACTTGCAATTGCTAATGTGGGGAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTTGACACGGTTGTTTTCTAG
Predicted protein sequences of Glyma.17g243800
>Glyma.17g243800.1.p sequence-type=predicted peptide transcript=Glyma.17g243800.1 locus=Glyma.17g243800 ID=Glyma.17g243800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRHFDSHSKTNEQTVQEMLSLAAKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*






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