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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42890.1 | AT | sterol carrier protein 2 | JGI | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0032934 | GO-mf | sterol binding | JGI | N/A | IEA |
| KOG4170 | KOG | 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes | JGI | N/A | IEA |
| PTHR10094 | Panther | STEROL CARRIER PROTEIN 2 (SCP-2) FAMILY PROTEIN | JGI | N/A | IEA |
| PF02036 | PFAM | SCP-2 sterol transfer family | JGI | N/A | IEA |
| LYSINE-DEG2-PWY | SoyCyc9 | lysine degradation II | Plant Metabolic Network | ISS | |
| PWY-5080 | SoyCyc9 | very long chain fatty acid biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5138 | SoyCyc9 | unsaturated, even numbered fatty acid β-oxidation | Plant Metabolic Network | ISS | |
| PWY-7036 | SoyCyc9 | very long chain fatty acid biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-7601 | SoyCyc9 | arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) | Plant Metabolic Network | ISS | |
| GN7V-67105 | SoyCyc9-rxn | 3α,7α,12αtrihydroxy-5β-cholest-24-enoyl-CoA dehydratase | Plant Metabolic Network | ISS |
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Glyma.17g242300 not represented in the dataset |
Glyma.17g242300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g082800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g36080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g242300.1 sequence-type=CDS polypeptide=Glyma.17g242300.1.p locus=Glyma.17g242300 ID=Glyma.17g242300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGATTCTTCTTCCAACCTGAAATCCGACGCGATAATGGAGCAGATGAAGCAACACCTCGCCACCGACGCTGGCAAACAAGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGAAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGGGTCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCGTTTAAGGATGAGGACTTTGTTAAGGTTGCCTTAGGGAAGATGAATCCGCAGATTGCTTTCATGAGGTTCGACCTTTCAATGGACTTTTTTCTTCCTAAATTTCTTCTTTGTTTATGCGTTCATGTGCTGATGTGCTTGTATTTGATGTGGTGGTTAATGGATGTAGGGGTGCGATGA
>Glyma.17g242300.1.p sequence-type=predicted peptide transcript=Glyma.17g242300.1 locus=Glyma.17g242300 ID=Glyma.17g242300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADSSSNLKSDAIMEQMKQHLATDAGKQVTNKIGLVYQFHIAPKKLGFDEVVYTVDLKKGEVTKGSYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMRFDLSMDFFLPKFLLCLCVHVLMCLYLMWWLMDVGVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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