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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G42920.2 | AT | THO complex, subunit 5 | JGI | N/A | IEA |
GO:0006406 | GO-bp | mRNA export from nucleus | EnsemblGenomes | N/A | IEA |
GO:0032786 | GO-bp | positive regulation of DNA-templated transcription, elongation | EnsemblGenomes | N/A | IEA |
GO:0000228 | GO-cc | nuclear chromosome | EnsemblGenomes | N/A | IEA |
GO:0000445 | GO-cc | THO complex part of transcription export complex | EnsemblGenomes | N/A | IEA |
GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
KOG2216 | KOG | Conserved coiled/coiled coil protein | JGI | N/A | IEA |
PTHR13375 | Panther | FMS INTERACTING PROTEIN | JGI | N/A | IEA |
PF09766 | PFAM | Fms-interacting protein | JGI | N/A | IEA |
Glyma.17g241800 not represented in the dataset |
Glyma.17g241800 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.14g083300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma17g36030 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g241800.2 sequence-type=transcript locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AATCAATATTCATCCAATAGAACGCGCCCCTACTGAGAGACCCGAAACACACTCATTGCGCGGAAGCAGTTATCGCTGCAAGAACAACAATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAATGAGTCACTTCTCTTTTATGTATACAGTTTTAGGATAGGAAGTGACTTCCTGGGTATTCATTGAATTAAAAATAATGCAGTCAACTGAAAAGATTGTTTTTGGTCTATGCTTTGGTTGTATTATTGTAACTGATATCTAGttttttttttttttttttGTCTGCCTGCTGTAAATCCTGGTAACCCATCTATTGTAAGATTTGTGTTTTTGTCCATTTATTGAAATTCCATTCTATTTGGGAGA
>Glyma.17g241800.1 sequence-type=CDS polypeptide=Glyma.17g241800.1.p locus=Glyma.17g241800 ID=Glyma.17g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGGCAGGAATATTTCAAATTCACCCACTTACTGTCAATCTCCATGTGTATGATGATGAGGTTACTGATCTTGAGTCTGCAAAACTCATTTCTCTAAAGTTTGAGTACTTGATGCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAA >Glyma.17g241800.2 sequence-type=CDS polypeptide=Glyma.17g241800.2.p locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAA
>Glyma.17g241800.1.p sequence-type=predicted peptide transcript=Glyma.17g241800.1 locus=Glyma.17g241800 ID=Glyma.17g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEDGDTTEEAVVVPVSNGDEQSFSHSSSRQRDSEEESPHETLRNTKASIENIVAEILSLKNQAKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKVPLELTTQKLQNLSYEKSQFVKAIKVCNDFKSKYPDIEVVSEEEFFRGAPQDMKDSVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQKRKTLLDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGVQHTKKLKRHHTAELLPPPLYVIYSQLLAQKEAFGESIDVEIIGSVKDAQAFSHHLAHKDTGISTTVESPKLENNEPDEDGQRQSKRPRRFQGKESLDQAGIFQIHPLTVNLHVYDDEVTDLESAKLISLKFEYLMQLNIICVGNEASNSGSENDILSDLFPDDTGLELPHQSAKLCVGNAIMFNGDRTARPYKWAQHLAGIDFLPEVAPLLLASRETSDSGEAAKGEDFITSLSQYRQQNRLQTVLQKIRSRIKAQLALQ* >Glyma.17g241800.2.p sequence-type=predicted peptide transcript=Glyma.17g241800.2 locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEDGDTTEEAVVVPVSNGDEQSFSHSSSRQRDSEEESPHETLRNTKASIENIVAEILSLKNQAKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKVPLELTTQKLQNLSYEKSQFVKAIKVCNDFKSKYPDIEVVSEEEFFRGAPQDMKDSVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQKRKTLLDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGVQHTKKLKRHHTAELLPPPLYVIYSQLLAQKEAFGESIDVEIIGSVKDAQAFSHHLAHKDTGISTTVESPKLENNEPDEDGQRQSKRPRRFQGKESLDQLNIICVGNEASNSGSENDILSDLFPDDTGLELPHQSAKLCVGNAIMFNGDRTARPYKWAQHLAGIDFLPEVAPLLLASRETSDSGEAAKGEDFITSLSQYRQQNRLQTVLQKIRSRIKAQLALQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||