SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g241800

Feature Type:gene_model
Chromosome:Gm17
Start:39743719
stop:39747218
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g241800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42920.2AT THO complex, subunit 5 JGI N/AIEA
GO:0006406GO-bp mRNA export from nucleus EnsemblGenomesN/AIEA
GO:0032786GO-bp positive regulation of DNA-templated transcription, elongation EnsemblGenomesN/AIEA
GO:0000228GO-cc nuclear chromosome EnsemblGenomesN/AIEA
GO:0000445GO-cc THO complex part of transcription export complex EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
KOG2216 KOG Conserved coiled/coiled coil protein JGI N/AIEA
PTHR13375Panther FMS INTERACTING PROTEIN JGI N/AIEA
PF09766PFAM Fms-interacting protein JGI N/AIEA

Expression Patterns of Glyma.17g241800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g241800
ParalogEvidenceComments
Glyma.14g083300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g241800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g36030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g241800
>Glyma.17g241800.2 sequence-type=transcript locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCAATATTCATCCAATAGAACGCGCCCCTACTGAGAGACCCGAAACACACTCATTGCGCGGAAGCAGTTATCGCTGCAAGAACAACAATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAATGAGTCACTTCTCTTTTATGTATACAGTTTTAGGATAGGAAGTGACTTCCTGGGTATTCATTGAATTAAAAATAATGCAGTCAACTGAAAAGATTGTTTTTGGTCTATGCTTTGGTTGTATTATTGTAACTGATATCTAGttttttttttttttttttGTCTGCCTGCTGTAAATCCTGGTAACCCATCTATTGTAAGATTTGTGTTTTTGTCCATTTATTGAAATTCCATTCTATTTGGGAGA
Coding sequences of Glyma.17g241800
>Glyma.17g241800.1 sequence-type=CDS polypeptide=Glyma.17g241800.1.p locus=Glyma.17g241800 ID=Glyma.17g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGGCAGGAATATTTCAAATTCACCCACTTACTGTCAATCTCCATGTGTATGATGATGAGGTTACTGATCTTGAGTCTGCAAAACTCATTTCTCTAAAGTTTGAGTACTTGATGCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAA

>Glyma.17g241800.2 sequence-type=CDS polypeptide=Glyma.17g241800.2.p locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAA
Predicted protein sequences of Glyma.17g241800
>Glyma.17g241800.1.p sequence-type=predicted peptide transcript=Glyma.17g241800.1 locus=Glyma.17g241800 ID=Glyma.17g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGDTTEEAVVVPVSNGDEQSFSHSSSRQRDSEEESPHETLRNTKASIENIVAEILSLKNQAKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKVPLELTTQKLQNLSYEKSQFVKAIKVCNDFKSKYPDIEVVSEEEFFRGAPQDMKDSVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQKRKTLLDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGVQHTKKLKRHHTAELLPPPLYVIYSQLLAQKEAFGESIDVEIIGSVKDAQAFSHHLAHKDTGISTTVESPKLENNEPDEDGQRQSKRPRRFQGKESLDQAGIFQIHPLTVNLHVYDDEVTDLESAKLISLKFEYLMQLNIICVGNEASNSGSENDILSDLFPDDTGLELPHQSAKLCVGNAIMFNGDRTARPYKWAQHLAGIDFLPEVAPLLLASRETSDSGEAAKGEDFITSLSQYRQQNRLQTVLQKIRSRIKAQLALQ*

>Glyma.17g241800.2.p sequence-type=predicted peptide transcript=Glyma.17g241800.2 locus=Glyma.17g241800 ID=Glyma.17g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGDTTEEAVVVPVSNGDEQSFSHSSSRQRDSEEESPHETLRNTKASIENIVAEILSLKNQAKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKVPLELTTQKLQNLSYEKSQFVKAIKVCNDFKSKYPDIEVVSEEEFFRGAPQDMKDSVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQKRKTLLDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGVQHTKKLKRHHTAELLPPPLYVIYSQLLAQKEAFGESIDVEIIGSVKDAQAFSHHLAHKDTGISTTVESPKLENNEPDEDGQRQSKRPRRFQGKESLDQLNIICVGNEASNSGSENDILSDLFPDDTGLELPHQSAKLCVGNAIMFNGDRTARPYKWAQHLAGIDFLPEVAPLLLASRETSDSGEAAKGEDFITSLSQYRQQNRLQTVLQKIRSRIKAQLALQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo