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Report for Sequence Feature Glyma.17g240000

Feature Type:gene_model
Chromosome:Gm17
Start:39548307
stop:39553633
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g240000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32230.1AT proteinaceous RNase P 1 JGI N/AIEA
GO:0001682GO-bp tRNA 5'-leader removal EnsemblGenomesN/AIEA
GO:0090501GO-bp RNA phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0004526GO-mf ribonuclease P activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI N/AIEA
PTHR24015Panther FAMILY NOT NAMED JGI N/AIEA
PF11977PFAM Zc3h12a-like Ribonuclease NYN domain JGI N/AIEA

Expression Patterns of Glyma.17g240000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g240000
ParalogEvidenceComments
Glyma.14g084800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g240000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g35850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g240000
>Glyma.17g240000.1 sequence-type=CDS polypeptide=Glyma.17g240000.1.p locus=Glyma.17g240000 ID=Glyma.17g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGCGAGACTCGCTCCCCCTTTCAGTATCTTCACACAATCCCATTACTGGCGCCCACTTCTCTCTTCTCACAACGCCAAACACGCCCTAACTGCCGCTACTAACTTCTCCATCACCTCATTAGCTCGAACGCCCAAATCACGAGATGAAGGAACAACCACCACCATTAAGCTTTCGAGCAAATCCAGAAGAAAAGCCTTCTATGAGTCCCCAGAAGGAGTCTTGTTGCGCAAGCTAAACGAGTGCTCAAAGGACGGAGATGTCATTCAAGCGCTTCGCCACTACGACGAGGCTCGAAAATTGGGGGTTCTACTCAGCCTTGATCACTACAACAAGTTGCTCTACCTGTGTTCTGTTGAAAGTGCTGCTGGTGTTCCCCATTTGGGTCTCAAAAGGGGGTTTGAGATTTTTCAGCAGATGTTGAATGACCGAGTTCAGCCCAATGAAGCCACTTTTACCAATGCTGCTAGGCTTGCTGCTGCCAAGGAAGATCCTGACATGGCTTTCGAATTGCTGAAGCAGATGAAGAATGTCGCGATTGCTCCGAAGCTGAGATCGTATGAGCCAGCTTTGTTTGGATTTTGCAAGAGGGGTGATGCCGAGAAGGCTTATCTAGTTGATGCTGACATGGTTGAGTCTGGGATTGTGGCGGAAGAGCCCGAGCTTTCTGCTCTTTTGGAAGTCAGTGTCAATGCCAATAAGGAAGACAAGGTGTATGAGGTTTTGCATCGGTTGCGTGCTACGTTGAGGCAGGTGTCTGAATCAACTTTGGGGATAGTTGAGAACTGGTTTAACTCAGAGTATGCTGCGAAAATTGGGAAGGAGAAGTGGGATGTTAAGAAGGTGAGGGAAGGGATTGCGCGGGGAGGTGGAGGATGGCATGGACAAGGGTGGCTTGGGAGTGGGCGGTGGAAGGTGGTGAATACTCAGGTGAACGAGGATGGCGTGTGTCTCTCGTGTGGGGAGAAGCTTGCGAGCATTGATATTGATCCAAAAGAGACTGAAAATTTTGCTGCCTCATTGTCTAAATTAGCTTGTCAAAAAGAAGCTAAGGCAAACTTTGTTCATTTTCAGACATGGCTTGAGCGGCATGGTCCGTTTGATGCTGTTGTAGATGGTGCCAATGTAGGCCTTGCCAATGGGCATAATTTCAGCTTTTCACAGCTTAACACTGTTGTTGAACAATTACGTCAAATAAGCCCTTCAAAGAGATTGCCTCTTATAATTTTGCATATAAGTCGGGTACATGGTGGTCCTGCTCAGAATCCAAAAAACAAGAGACTTATAGAAAATTGGAAAAAAAATGGCGTTCTTTATGCTACACCTCAAGGTTCAAATGATGACTGGTATTGGTTATATGCTGCTGTTAGTTGTAAATGCTTACTGCTAACAAATGACGAGATGAGGGACCACTTGTTCCAACTATTGGGTTCTAATTTTTTCCCGAGATGGAAGGAAAAACATCAGGTTCGAACATCAGCCTCAACTTGTGGACGCTCCCTAATTATGCCTCCCCGTTATTCAATAGTTATTCAGGAATCAGCCAGTGGTTGTTGGCATGTGCCAACTGTAACTACTGATGATCATGAGATCCCAAGGAAATGGTTGTGTGCCACAAGATCCAGAAAAGATTCATTACATAATCTATGA
Predicted protein sequences of Glyma.17g240000
>Glyma.17g240000.1.p sequence-type=predicted peptide transcript=Glyma.17g240000.1 locus=Glyma.17g240000 ID=Glyma.17g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMARLAPPFSIFTQSHYWRPLLSSHNAKHALTAATNFSITSLARTPKSRDEGTTTTIKLSSKSRRKAFYESPEGVLLRKLNECSKDGDVIQALRHYDEARKLGVLLSLDHYNKLLYLCSVESAAGVPHLGLKRGFEIFQQMLNDRVQPNEATFTNAARLAAAKEDPDMAFELLKQMKNVAIAPKLRSYEPALFGFCKRGDAEKAYLVDADMVESGIVAEEPELSALLEVSVNANKEDKVYEVLHRLRATLRQVSESTLGIVENWFNSEYAAKIGKEKWDVKKVREGIARGGGGWHGQGWLGSGRWKVVNTQVNEDGVCLSCGEKLASIDIDPKETENFAASLSKLACQKEAKANFVHFQTWLERHGPFDAVVDGANVGLANGHNFSFSQLNTVVEQLRQISPSKRLPLIILHISRVHGGPAQNPKNKRLIENWKKNGVLYATPQGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSNFFPRWKEKHQVRTSASTCGRSLIMPPRYSIVIQESASGCWHVPTVTTDDHEIPRKWLCATRSRKDSLHNL*






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