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Report for Sequence Feature Glyma.17g238800

Feature Type:gene_model
Chromosome:Gm17
Start:39431136
stop:39435970
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g238800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G07390.1AT Mannose-P-dolichol utilization defect 1 protein JGI N/AIEA
GO:0006488GO-bp dolichol-linked oligosaccharide biosynthetic process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
KOG3211 KOG Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization JGI N/AIEA
PTHR12226Panther MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 (LEC35)-RELATED JGI N/AIEA
PTHR12226:SF2Panther MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN JGI N/AIEA
PF04193PFAM PQ loop repeat JGI N/AIEA

Expression Patterns of Glyma.17g238800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g238800 not represented in the dataset
Glyma.17g238800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g238800
ParalogEvidenceComments
Glyma.14g085900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g238800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g35700 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g238800
>Glyma.17g238800.1 sequence-type=CDS polypeptide=Glyma.17g238800.1.p locus=Glyma.17g238800 ID=Glyma.17g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATATCTAGGGATTGATCTAAGCTGCGCCGTTGGATCTCTCCGCCACGGCCAGTTCCCGGAGAAGGATTGCTTGCTCCCTCTCATTTCCAAACTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTTCCCCAGATTATGAAAATTCTGAAGCATCAGAGTGTGAGAGGCCTTAGCATGATATCCTTCGAGCTTGAAGTTATTGGATATACCATTGCCTTGGCTTACTGTCTCCACAAAGGCCTTCCATTTTCGGCTTACGGAGAGTTGTTGTTTCTTTTGATCCAAGCTTTAGTATTGGTTGCCATAATCTACTACTATTCTCGACCTTTGCATGCAATAACATGGATCCGGGCATTGCTATATTGTGCTGTAGCACCCACTATCTTAGCTGGTCAAATTGATCCTCTACTCTTTGAAGCTCTGTATGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCTAACAAAAGTACAGGTGAACTCAGCTTCATAACTTCTTTTATGAATTTTGGAGGTTCAATGGTTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTGTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAAGTAA
Predicted protein sequences of Glyma.17g238800
>Glyma.17g238800.1.p sequence-type=predicted peptide transcript=Glyma.17g238800.1 locus=Glyma.17g238800 ID=Glyma.17g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYLGIDLSCAVGSLRHGQFPEKDCLLPLISKLLGYAIVAASTTVKLPQIMKILKHQSVRGLSMISFELEVIGYTIALAYCLHKGLPFSAYGELLFLLIQALVLVAIIYYYSRPLHAITWIRALLYCAVAPTILAGQIDPLLFEALYASQHAIFLFARIPQIWQNFSNKSTGELSFITSFMNFGGSMVRVFTTIQESAPKSVLLGYAIGVATNFTILSQIIAYQKPQVGKEKKTK*






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