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Report for Sequence Feature Glyma.17g236200

Feature Type:gene_model
Chromosome:Gm17
Start:39123094
stop:39124429
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g236200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27730.1AT salt tolerance zinc finger JGI N/AIEA
GO:0010200GO-bp response to chitin EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
PTHR26374Panther FAMILY NOT NAMED JGI N/AIEA
PTHR26374:SF459Panther JGI N/AIEA

Proteins Associated with Glyma.17g236200
LocusGene SymbolProtein Name
SCOF-1 scof-1 protein

Expression Patterns of Glyma.17g236200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g236200
ParalogEvidenceComments
Glyma.14g088300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g236200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g35430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g236200
>Glyma.17g236200.1 sequence-type=CDS polypeptide=Glyma.17g236200.1.p locus=Glyma.17g236200 ID=Glyma.17g236200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGGAAGCTCTCAACTCACCAACAACAACCGCTCCATCTTTTCCCTTTGACGACCCAACTATTCCATGGGCGAAACGAAAACGTTCAAAGCGTTCTCGCGACCATCCTTCTGAAGAAGAGTACCTCGCCCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCACCGTCAACAACCGCCACGTCAGCCCTCCGCCGCCACAGCCACAGCCACAGCCGACACCAGATCCTTCCACCAAGCTCAGTTACAAATGCTCCGTTTGCGACAAGAGCTTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGTCACCGGAAACTCGCCGGCGCCGCCGAAGACCAACCCCCCAGCACCACCACTTCCTCCGCCGCCGCCACCAGCTCCGCCTCCGGAGGTAAGGCCCATGAGTGCTCCATTTGCCACAAATCCTTCCCCACCGGACAGGCCCTTGGCGGACACAAACGTTGTCACTACGAAGGTAACGGTAACGGAAATAACAACAACAGTAACAGCGTTGTCACCGTCGCCTCGGAAGGCGTGGGCTCCACCCACACTGTCAGTCACGGCCACCACCGCGACTTCGATCTCAACATCCCGGCCTTTCCGGATTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTCATGAAGAAGCCTCGCCTCTTCGTCATTCCCAAGATCGAAATCCCCCAATTTCAATGA
Predicted protein sequences of Glyma.17g236200
>Glyma.17g236200.1.p sequence-type=predicted peptide transcript=Glyma.17g236200.1 locus=Glyma.17g236200 ID=Glyma.17g236200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGTTTVNNRHVSPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGGHKASHRKLAGAAEDQPPSTTTSSAAATSSASGGKAHECSICHKSFPTGQALGGHKRCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVGEDEVESPHPVMKKPRLFVIPKIEIPQFQ*






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